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=== Experimental Programs ===
 * [[EMAN2/Programs/tomotrackbox|examples/tomotrackbox.py]] - This tomography program will allow you to individually reconstruct particles or sections from an aligned tilt series, and play with various options.

EMAN2 Programs

UNDER CONSTRUCTION

Note that running any EMAN2 program with the '--help' option will provide basic documentation for that program.

Important Utilities

High Level Tasks

  • e2workflow.py - The GUI workflow interface. Suggested for all reconstruction projects.

  • e2refine2d.py - 2-D iterative reference-free class-averaging

  • e2initialmodel.py - Single particle reconstruction, initial model generation

  • e2refine.py - Single particle reconstruction, iterative refinement

  • e2eotest.py - Single particle reconstruction, resolution assessment

  • e2evalrefine.py - Tools for comparing refinement runs and evaluating results

  • e2classifyligand.py - Classify data into two groups based on reference models/masks

Programs with a GUI

  • e2workflow.py - The GUI workflow interface. Suggested for all reconstruction projects.

  • e2display.py - Main program for 2-D and 3-D visualization and interactive manipulation

  • e2boxer.py - Particle picker for single particle analysis

  • e2helixboxer.py - Selection tool for helical objects

  • e2ctf.py - Contrast transfer estimation and correction

  • e2eulerxplor.py - Display particle orientation distribution from e2refine.py results

  • e2simmxxplor.py - Display classification similarity metrics for individual particles

Low Level Tasks

  • e2scannereval.py - Tool to look for scanner artifacts (film) or localized distortions (CCD frames)

  • e2classaverage.py - Generate 2-D class-averages from sets of classified particles

  • e2ctf.py - Contrast transfer function estimation and correction

  • e2make3d.py - Reconstruct a 3-D map from a set of 2-D projections/class-averages

  • e2project3d.py - Generate 2-D projections from 3-D maps

  • e2simmx.py - Compute exhaustive similarity comparison between set of particles and references

  • e2simmx2stage.py - More efficient version of e2simmx.py (not exhaustive)

Experimental Programs

  • examples/tomotrackbox.py - This tomography program will allow you to individually reconstruct particles or sections from an aligned tilt series, and play with various options.

Generic Docs

slices_plus_cylinders.png

EMAN2/Programs (last edited 2018-04-25 00:59:47 by TunayDurmaz)