To get a current list of Aligners, run aligner or for more detailed information aligner -v 2.

For single particle analysis, we currently recommend using rotate_translate_flip for first stage alignment, and refine for second-stage alignment. refine is currently the only available 2-D second stage aligner.

The _3d variants are for Single Particle Tomography or other 3-D alignment tasks.

EMAN2/Modular/Aligners (last edited 2011-07-11 20:09:13 by SteveLudtke)