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| Aside from the autogenerated docs: * Here is a [wiki:EMAN1To2Translation Table of translations from EMAN1 functions -> EMAN2] |
=== Documentation for Python or C++ Programmers === * [[Eman2ProgQuickstart|EMAN2 python programming quickstart]] * [[Eman2CProgQuickstart|EMAN2 C++ programming quickstart]] * [[Eman2DataStorage|EMAN2 data storage, format conversion and local database]] * [[Eman2Metadata|Parameters/Metadata appearing in EMData attributes (and stored on disk with the image), accessed with get_attr and set_attr]] * [[Eman2AppMetadata|Parameters/Metadata for applications, not associated with a specific image, stored in bdb:project]] * [[Eman2UsingFTGL|Using FTGL in python/EMAN2]] * [[Eman2TransformInPython|Using the Transform object in python/EMAN2]] * [[Eman2UsingCudaFromC++|The EMData class and CUDA ]] * [[Eman2FactoriesInPython| Abstract factories in python/EMAN2]] * [[EMAN1To2Translation|Limited Table of translations from EMAN1 functions -> EMAN2]] * [[EMAN2ImageFormats|Image Formats in EMAN2]] * [[http://blake.bcm.edu/eman2/doxygen_html/|Autogenerated Python/C++ Documentation (Doxygen)]] * There are a LOT of classes in the automatic docs. Basic images are represented by the EMData class * The EMData methods process, cmp, align, and project are modular methods with many available functions. Use dump_processors(), dump_cmps(), etc. * There are a few classes like analyzers and reconstructors which are not methods of EMData * Many utility functions are static members of EMUtil |
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| Programming Internals: EMAN2 uses [http://www.boost.org/libs/python/doc/ Boost.python] to wrap c++ functions to Python. [http://www.boost.org/libs/python/pyste/ Pyste] is a Boost.Python code generator to automate this process. In EMAN2 there is a script create_boost_python in /eman2/libpyEM directory calls Pyste to create c++ wrapping files libpy***.cpp. Then the c++ compiler will create libraries which contain all the Python function call of EMAN2. Current release of Pyste has a dificit for the default argument handling. So please replace two of your Pyste files in Python site-packages with attached files. |
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Documentation for Python or C++ Programmers
Parameters/Metadata for applications, not associated with a specific image, stored in bdb:project
Autogenerated Python/C++ Documentation (Doxygen)
- There are a LOT of classes in the automatic docs. Basic images are represented by the EMData class
- The EMData methods process, cmp, align, and project are modular methods with many available functions. Use dump_processors(), dump_cmps(), etc.
- There are a few classes like analyzers and reconstructors which are not methods of EMData
- Many utility functions are static members of EMUtil
