This is a mapping of EMAN1 EMData methods to EMAN2 so old scripts can be updated.
EMAN |
EMAN2 |
.calcCCF |
.calc_ccf |
.copy |
.copy |
.doFFT |
.do_fft or .do_fft_inplace |
.EMData |
.EMData |
.gimmeFFT |
Not necessary, no FFT caching |
.Mean |
.get_attr("mean") or .get_attr_dict()mean |
.MinLoc |
.calc_min_index or .calc_min_location() |
.readImage |
.read_image or EMData(path,n) constructor |
.realFilter |
.process("threshold.binary") |
.ri2ap |
.ri2ap |
.rotateAndTranslate |
.rot_scale_trans, .rot_scale_trans2D, others. see Transform class |
.setRAlign |
no equivalent |
.setSize |
.set_size |
.setTAlign |
no equivalent |
.setValueAt |
.set_value_at |
.Sigma |
see .Mean() |
.toCorner |
.process_inplace("xform.phaseorigin.tocorner") |
.update |
.update |
.valueAt |
.get_value_at |
.writeImage |
.write_image |
.x(y)(z)Size |
.get_(x,y,z)size |
.zero |
.to_zero |
|
.set_complex, note new constructor EMData(nx,ny,nz,real=1) if real=0 image will be complex |
|
.set_ri |
|
.do_ift |