Diff for "EMAN2/Library"

Differences between revisions 21 and 33 (spanning 12 versions)

Documentation for Python or C++ Programmers

Introductory concepts

EMAN2 Python Programming Style Guide
EMAN2 python programming quickstart
Image Formats in EMAN2
EMAN2 data storage & format conversion
EMAN2 BDB access from Python
Parameters/Metadata appearing in EMData attributes (and stored on disk with the image), accessed with get_attr and set_attr
Parameters/Metadata for applications, not associated with a specific image, stored in bdb:project
Limited Table of translations from EMAN1 functions -> EMAN2
Specific object types
- Using the Transform object (python) (arbitrary 2-D and 3-D transformations)
- Using Reconstructor classes

Intermediate Concepts

EMAN2 C++ programming quickstart
How to add new capabilities to EMAN2 in C++
Using FTGL in python/EMAN2
Using the EMScene3D widget (3-D object display)

Advanced Topics

The EMData class and CUDA
Abstract factories in python/EMAN2 (Modular classes, like processors, projectors, reconstructors, etc.)

Detailed Documentation on all Classes/Methods/Functions

Autogenerated Python/C++ Documentation (Doxygen)
- There are a LOT of classes in the automatic docs. Basic images are represented by the EMData class
- The EMData methods process, cmp, align, and project are modular methods with many available functions. Use dump_processors(), dump_cmps(), etc.
- There are a few classes like analyzers and reconstructors which are not methods of EMData
- Many utility functions are static members of EMUtil

-  ⇤ ← Revision 21 as of 2009-03-05 18:09:45 → 
  Size: 1342
  Editor: DavidWoolford
  Comment:
+   ← Revision 33 as of 2011-10-26 14:13:28 → ⇥
  Size: 2065
  Editor: SteveLudtke
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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- * [[EMAN2DevFAQ|EMAN2 developer's FAQ]]
 * [[Eman2ProgQuickstart|EMAN2 programming quickstart]]
 * [[Eman2DataStorage|EMAN2 data storage, format conversion and local database]]
+==== Introductory concepts ====
 * [[EMAN2PythonStyleGuide|EMAN2 Python Programming Style Guide]]
 * [[Eman2ProgQuickstart|EMAN2 python programming quickstart]]
 * [[EMAN2ImageFormats|Image Formats in EMAN2]]
 * [[Eman2DataStorage|EMAN2 data storage & format conversion]]
 * [[Eman2BdbStorage|EMAN2 BDB access from Python]]
-Line 7:
+Line 10:
+ * [[EMAN1To2Translation|Limited Table of translations from EMAN1 functions -> EMAN2]]
 * Specific object types
  * [[Eman2TransformInPython|Using the Transform object (python) (arbitrary 2-D and 3-D transformations)]]
  * [[Eman2Reconstructors|Using Reconstructor classes]]

==== Intermediate Concepts ====
 * [[Eman2CProgQuickstart|EMAN2 C++ programming quickstart]]
 * [[Eman2ProgOverview|How to add new capabilities to EMAN2 in C++]]
-Line 8:
+Line 19:
- * [[Eman2TransformInPython|Using the Transform object in python/EMAN2]]
 * [[Eman2UsingCudaFromC++|The EMData class and CUDA ]]
 * [[Eman2FactoriesInPython| Abstract factories in python/EMAN2]]
 * [[EMAN1To2Translation|Limited Table of translations from EMAN1 functions -> EMAN2]]
+ * [[Eman2Using3DWidget|Using the EMScene3D widget (3-D object display)]]

==== Advanced Topics ====
 * [[Eman2UsingCudaFromC++|The EMData class and CUDA]]
 * [[Eman2FactoriesInPython|Abstract factories in python/EMAN2]] (Modular classes, like processors, projectors, reconstructors, etc.)

==== Detailed Documentation on all Classes/Methods/Functions ====
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+{{attachment:sphere_cylinder_dist_grey_c.png}}