align2d
This program will align a set of images to a reference
Usage
align2d <fixed input> <input> <output> [fixn=<n>] [noflip] [precen] [seqali] [eulali] [pgm] [log] [edgenorm] [keepeulers]
Parameters
- Typical usage: align2d proj.hed cls000.hed tst.hed
Expected "=" to follow "fixed"
Expected "=" to follow "fixed" Reference image
Expected "=" to follow "input" Images to be aligned
Expected "=" to follow "output" Output filename
[fixn=<n>]
Image number to use in fixed input stack
[noflip]
Rotational/translational alignment without flips
[precen]
No translational alignment
[seqali]
Align 1st image to ref, 2nd to 1st, 3rd to 2nd, etc.
[eulali]
Align each image to images with similar Eulers, referring to the 1st image in the file.
[pgm]
Output in pgm format, note there should only be one input in this case
[log]
Logs rotations/translations to align.log
[edgenorm]
Perform an edgenormalization of both images before alignment
[keepeulers]
Indicates that the input images have accurate Eulers which need to be preserved.
Description
Pretty self explanatory. If the input is a stack, the first image is used.
EMAN Manual page, generated Mon Jan 8 17:35:59 2007