This program will align a set of images to a reference
align2d <fixed input> <input> <output> [fixn=<n>] [noflip] [precen] [seqali] [eulali] [pgm] [log] [edgenorm] [keepeulers]
- Typical usage: align2d proj.hed cls000.hed tst.hed
Images to be aligned
Image number to use in fixed input stack
Rotational/translational alignment without flips
No translational alignment
Align 1st image to ref, 2nd to 1st, 3rd to 2nd, etc.
Align each image to images with similar Eulers, referring to the 1st image in the file.
Output in pgm format, note there should only be one input in this case
Logs rotations/translations to align.log
Perform an edgenormalization of both images before alignment
Indicates that the input images have accurate Eulers which need to be preserved.
Pretty self explanatory. If the input is a stack, the first image is used.
EMAN Manual page, generated Mon Jan 8 17:35:59 2007