eman2:tutorials_rotatetranslate
Table of Contents
Transforming Images (Applying Rotation, Translation, Scale and Mirroring)
What follows is a very simply demonstration of using the Transform object to transform EMData (image) objects. A very thorough explanation of using the Transform is presented in Using the EMAN2 Transform class and you are encouraged to at least be aware of that page's existence.
Using EMData.transform
The first example here is a 3D example.
#!python [someone@localhost]# e2.py Welcome to EMAN2 Prompt provided by IPython Enter '?' for ipython help In [3]: e = test_image_3d() # 3D test image In [4]: t = Transform({"type":"eman","az":45,"alt":90}) In [5]: t.set_trans(1,-2,5) In [6]: t.set_scale(2.0) In [7]: e.transform(t) In [8]: display(e)
This second example is a 2D example.
#!python In [9]: e = test_image() # This is a 2D test image In [10]: t = Transform({"type":"2d","alpha":45}) # Note 2D terminology In [11]: t.set_trans(3,-2) # Note 2D translation In [12]: t.set_mirror(True) In [13]: e.transform(t) In [14]: display(e)
Using the Processor Framework
You can use the processor framework to process an EMData object in and out of place. This can be useful when you wish to operate on a copy of the original image, as opposed to altering it.
#!python In [15]: t = Transform(....) # Construct a transform as above In [16]: out_of_place = e.process("xform",{"transform":t}) # Out of place In [17]: e.process_inplace("xform",{"transform":t}) # Inplace In [18]: e.transform(t) # exactly the same as line above
eman2/tutorials_rotatetranslate.txt · Last modified: by steveludtke