WARNING: This page was written in the early days of EMAN2 and some of its concepts are no longer accurate. For example, the BDB database system was retired over a decade ago in favor of HDF and LST files. There are still some useful things here, but take them with a grain of salt.
The EMAN2 workflow currently offers an integrated solution for:
This is an excellent choice for both EMAN1 users as well as users new to EMAN, and is the interface I personally use when I do refinements (with a few small exceptions). Each of the links above is to a detailed tutorial for the corresponding task.