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--- eman2:e2tomo_atpsyn [2026/06/06 03:10] – muyuanchen
+++ eman2:e2tomo_atpsyn [2026/06/11 16:19] (current) – muyuanchen
@@ Line 13: / Line 13: @@
 Unzip the dataset, and you should have a folder called "tiltseries", with four hdf image stacks in it, inside the project folder. To view the tilt series, run **e2display.py**, locate the file in the browser, and click **Show2D**.
-{{:eman2:atpsyn_tilt_series.jpg|tiltseries|width="600"}}
+{{:eman2:atpsyn_tilt_series.jpg|tiltseries}}
 ===== Initial tomogram reconstruction =====
@@ Line 216: / Line 216: @@
+===== Map particles to tomograms =====
+As shown in previous tutorials, we can map particles back to the original tomograms to visualize their organization inside the tomogram.
+<code>
+e2spt_mapptclstotomo.py --path=spt_03 --iter=7 --tomo=tomograms/14042022_BrnoKrios_Arctis_grid5_Position_17__bin4.hdf --new
+</code>
+Then open the raw tomogram and the mapped back particles (spt_03/ptcls_in_tomo_14042022_BrnoKrios_Arctis_grid5_Position_17_07.hdf) in Chimera.
+{{:eman2:atpsyn_map_back.jpg | Particles in tomo | width="600"}}