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| ||8:00 - 8:50 ||Registration ||Outside PGH 200 || ||8:50 - 9:10 ||Opening remarks/Introduction to Workshop ||PGH200 ||Dr. Steve Ludtke || ||9:10 - 10:00 ||[[attachment:1_1_chiu_microscopy.pdf|Introduction to transmission electron microscopy]] ||PGH200 ||Dr. Wah Chiu || ||10:00 - 10:50 ||[[attachment:1_2_henderson_image_processing.pdf|Image processing theory]] ||PGH200 ||Dr. Richard Henderson || ||11:00 - 11:20 ||Coffee Break || ||11:20 - 12:30 ||[[attachment:1_3_ludtke_EMAN2.pdf|Tutorial 1 - Getting started with EMAN2, CTF & class-averages]] ||PGH232&200 ||Dr. Steve Ludtke || ||12:30 - 1:30 ||Lunch || ||1:30 - 3:00 ||Tutorial 1, contd - Initial models ||PGH232&200 ||Dr. Steve Ludtke || ||3:00 - 3:20 ||Coffee Break || ||3:20 - 5:00 ||Tutorial 1, contd - First refinement & other issues ||PGH232&200 ||Dr. Steve Ludtke || ||5:00 - 6:00 ||[[attachment:1_4_cong_TriC-CCT.pdf|Research Lecture: Structural studies of TriC/CCT]] ||PGH200 ||Dr. Yao Cong || ||6:00 - 9:00 ||Dinner onsite - with participant short talks ||PGH200 || |
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| ||8:00 - 8:50||Registration||Outside PGH 200|| ||8:50 - 9:10||Opening remarks/Introduction to Workshop||PGH200||Dr. Steve Ludtke and others|| ||9:10 - 10:00||[[attachment:1_1_chiu_microscopy.pdf|Introduction to transmission electron microscopy]]||PGH200||Dr. Wah Chiu|| ||10:00 - 10:50||[[attachment:1_2_henderson_image_processing.pdf|Image Processing Theory]]||PGH200||Dr. Richard Henderson||PGH200|| ||11:00 - 11:20||Coffee Break||PGH200 Hall|| ||11:20 - 12:30||[[attachment:1_3_ludtke_EMAN2.pdf|Tutorial 1 - Getting started with EMAN2, CTF & Class-averages]]||PGH232&200||Dr. Steve Ludtke|| ||12:30 - 1:30||Lunch||PGH200 Hall|| ||1:30 - 3:00||Tutorial 1, contd - Initial models||PGH232&200||Dr. Steve Ludtke|| ||3:00 - 3:20||Coffee Break||PGH200 Hall|| ||3:20 - 5:00||Tutorial 1, contd - First refinement & other issues||PGH232&200||Dr. Steve Ludtke|| ||5:00 - 6:00||[[attachment:1_4_cong_TriC-CCT.pdf|Research Lecture: Structural studies of TriC/CCT]]||PGH200||Dr. Yao Cong|| ||6:00 - 9:00||Dinner - with participant short talks||PGH200|| |
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| ||9:00 - 10:00 ||[[attachment:2_1_egelman_IHRSR.pdf|Helical filaments, heterogeneity and polymorphisms]] ||PGH200 ||Dr. Edward Egelman || ||10:00 - 10:20 ||Coffee Break || ||10:20 - 11:20 ||[[attachment:2_2_penczek_conformation.pdf|Identification of conformational states using resampling]] ||PGH200 ||Dr. Pawel Penczek || ||11:30 - 12:30 ||[[attachment:2_3_goddard_chimera.pdf|Tutorial 2 - Chimera]] ||PGH232&200 ||Tom Goddard || ||12:30 - 1:30 ||Lunch || ||1:30 - 3:00 ||[[attachment:2_4_ludtke_EMAN2.pdf|Tutorial 3 - Evaluating refinements, heterogeneity, etc.]] ||PGH232&200 ||Dr. Steve Ludtke || ||3:00 - 3:15 ||Coffee Break || ||3:15 - 5:00 ||[[attachment:2_5_penczek_SPARX.pdf|Tutorial 4 - Introduction to identification of conformational states in SPARX]] ||PGH232&200 ||Dr. Pawel Penczek || ||5:15 - 6:15 ||[[attachment:2_6_zhang_mmcpn.pdf|Research Talk - Multiple states of a chaperonin and a method]] [[attachment:2_6_zhang_mmcpn.pdf|for analyzing heterogeneous conformations in cryo-EM]] ||PGH200 ||Dr. Junjie (George) Zhang || ||6:30 - 9:00 ||Dinner ||UH Library || |
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| ||9:00 - 10:00||[[attachment:2_1_egelman_IHRSR.pdf|Helical Filaments, Heterogeneity and Polymorphisms]]||PGH200||Dr. Edward Egelman|| ||10:00 - 10:20||Coffee Break||PGH200 Hall|| ||10:20 - 11:20||[[attachment:2_2_penczek_conformation.pdf|Identification of conformational states using resampling]]||PGH200||Dr. Pawel Penczek|| ||11:30 - 12:30||[[attachment:2_3_goddard_chimera.pdf|Tutorial 2 - Chimera]]||PGH232&200||Tom Goddard|| ||12:30 - 1:30||Lunch||PGH200 Hall|| ||1:30 - 3:00||[[attachment:2_4_ludtke_EMAN2.pdf|Tutorial 3 - Evaluating refinements, heterogeneity, etc.]]||PGH232&200||Dr. Steve Ludtke|| ||3:00 - 3:15||Coffee Break||PGH200 Hall|| ||3:15 - 5:00||[[attachment:2_5_penczek_SPARX.pdf|Tutorial 4 - Introduction to identification of conformational states in SPARX]]||PGH232&200||Dr. Pawel Penczek|| ||5:15 - 6:15||[[attachment:2_6_zhang_mmcpn.pdf|Research Talk - Multiple states of a chaperonin and a method for analyzing heterogeneous conformations in cryo-EM]]||PGH200||Dr. Junjie (George) Zhang|| ||6:30 - 9:00||Dinner||Library/Hilton|| |
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| ||'''8:50 - 9:15''' ||[[attachment:3_1_murray_frealign.pdf|Tutorial 5 - Quick morning tutorial session]] ||'''PGH232&200''' ||Stephen Murray || ||9:15 - 10:00 ||[[attachment:3_2_schmid_spt.pdf|Single particle tomography]] ||PGH200 ||Dr. Mike Schmid || ||10:10 - 10:30 ||Coffee Break || ||10:30 - 11:00 ||[[attachment:3_3_lawson_PDB.pdf|EMDatabank.org & Data Archival]] ||PGH200 ||Dr. Cathy Lawson || ||11:00 - 11:45 ||[[attachment:3_4_pintilie_segger.pdf|Tutorial 6 - Segmentation with Segger]] ||PGH200&232 ||Dr. Greg Pintilie || ||11:45 - 12:45 ||Lunch || ||12:45 - 3:00 ||Tutorial 5 cont'd - Frealign, multirefine, etc. ||PGH200&232 ||Dr. Steve Ludtke & Stephen Murray || ||3:00 - 3:30 ||Coffee Break || ||3:30 - 5:00 ||[[attachment:3_5_montoya_spt.pdf|Tutorial 7 - Single Particle Tomography in EMAN2]] ||PGH200&232 ||Jesus Montoya & Dr. John Flanagan || ||5:10 - 6:10 ||[[attachment:3_6_serysheva_cachannels.pdf|Research Talk - Structural studies of Calcium release channels]] ||PGH200&232 ||Dr. Irina Serysheva || ||7:00 - 9:00 ||Workshop Banquet '''Bus leaves U of H at 6:30 !''' ||Fung’s Kitchen|| |
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| ||'''8:50 - 9:15'''||[[attachment:3_1_murray_frealign.pdf|Tutorial 5 - Quick morning tutorial session]]||'''PGH232&200'''||Stephen Murray|| ||9:15 - 10:00||[[attachment:3_2_schmid_spt.pdf|Single Particle Tomography]]||PGH200||Dr. Mike Schmid|| ||10:10 - 10:30||Coffee Break||PGH200 Hall|| ||10:30 - 11:00||[[attachment:3_3_lawson_PDB.pdf|EMDatabank.org & Data Archival]]||PGH200||Dr. Cathy Lawson|| ||11:00 - 11:45||[[attachment:3_4_pintilie_segger.pdf|Tutorial 6 - Segmentation with Segger]]||PGH200&232||Dr. Greg Pintilie|| ||11:45 - 12:45||Lunch||PGH200 Hall|| ||12:45 - 3:00||Tutorial 5 cont'd - Frealign, multirefine, etc.||PGH200&232||Dr. Steve Ludtke & Stephen Murray|| ||3:00 - 3:30||Coffee Break||PGH200 hall|| ||3:30 - 5:00||[[attachment:3_5_montoya_spt.pdf|Tutorial 7 - Single Particle Tomography in EMAN2]]||PGH200&232||Jesus Montoya & Dr. John Flanagan|| ||5:10 - 6:10||[[attachment:3_6_serysheva_cachannels.pdf|Research Talk - Structural studies of Calcium release channels]]||PGH200&232||Dr. Irina Serysheva|| ||7:00 - 9:00||Workshop Banquet at Fung’s Kitchen '''Bus leaves U of H at 6:30 !'''|| |
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| ||9:00 - 10:00 ||[[attachment:4_1_henderson_validation.pdf|Methods for Validation of Cryo-EM Maps]] ||PGH200 ||Dr. Richard Henderson || ||10:00 - 10:30 ||Coffee Break || ||10:30 - 11:30 ||[[attachment:4_2_schroeder_direx.pdf|Real-space Refinement of Atomic Models in DireX]] ||PGH200/232 ||Dr. Gunnar Schroeder || ||11:30 - 12:15 ||[[attachment:4_3_rees_emen2.pdf|The EMEN2 Electronic Notebook and OODB]] ||PGH200/232 ||Ian Rees || ||12:15 - 1:00 ||Lunch || ||1:00 - 2:30 ||[[attachment:4_4_cong_rosetta.pdf|Introduction to Rosetta]] ||PGH200/232 ||Dr. Yao Cong || ||2:30 - 3:00 ||Coffee Break || ||3:00 - 4:30 ||[[attachment:4_5_baker_gorgon.pdf|Model Building and Analysis with Gorgon]] ||PGH200/232 ||Dr. Matt Baker || ||4:30 - 5:30 ||Workshop wrap-up, final discussion || |
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| ||9:00 - 10:00||[[attachment:4_1_henderson_validation.pdf|Methods for Validation of Cryo-EM Maps]]||PGH200||Dr. Richard Henderson|| ||10:00 - 10:30||Coffee Break||PGH200 hall|| ||10:30 - 11:30||[[attachment:4_2_schroeder_direx.pdf|Real-space Refinement of Atomic Models in DireX]]||PGH200/232||Dr. Gunnar Schroeder|| ||11:30 - 12:15||[[attachment:4_3_rees_emen2.pdf|The EMEN2 Electronic Notebook and OODB]]||PGH200/232||Ian Rees|| ||12:15 - 1:00||Lunch||PGH200 Hall|| ||1:00 - 2:30||[[attachment:4_4_cong_rosetta.pdf|Introduction to Rosetta]]||PGH200/232||Dr. Yao Cong|| ||2:30 - 3:00||Coffee Break||PGH200 Hall|| ||3:00 - 4:30||[[attachment:4_5_baker_gorgon.pdf|Model Building and Analysis with Gorgon]]||PGH200/232||Dr. Matt Baker|| ||4:30 - 5:30||Workshop wrap-up, final discussion|| |
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| ''Note: Wah will host a dinner for any speakers who will be around Thurs evening'' | ''Note: Wah will host a dinner for any speakers who will be around Thurs evening'' |
Mon Mar 14, 2011
Theme - Single particle reconstruction
8:00 - 8:50 |
Registration |
Outside PGH 200 |
|
8:50 - 9:10 |
Opening remarks/Introduction to Workshop |
PGH200 |
Dr. Steve Ludtke |
9:10 - 10:00 |
PGH200 |
Dr. Wah Chiu |
|
10:00 - 10:50 |
PGH200 |
Dr. Richard Henderson |
|
11:00 - 11:20 |
Coffee Break |
||
11:20 - 12:30 |
Tutorial 1 - Getting started with EMAN2, CTF & class-averages |
PGH232&200 |
Dr. Steve Ludtke |
12:30 - 1:30 |
Lunch |
||
1:30 - 3:00 |
Tutorial 1, contd - Initial models |
PGH232&200 |
Dr. Steve Ludtke |
3:00 - 3:20 |
Coffee Break |
||
3:20 - 5:00 |
Tutorial 1, contd - First refinement & other issues |
PGH232&200 |
Dr. Steve Ludtke |
5:00 - 6:00 |
PGH200 |
Dr. Yao Cong |
|
6:00 - 9:00 |
Dinner onsite - with participant short talks |
PGH200 |
Tue Mar 15, 2011
Theme - Helices & Heterogeneity
9:00 - 10:00 |
PGH200 |
Dr. Edward Egelman |
|
10:00 - 10:20 |
Coffee Break |
||
10:20 - 11:20 |
PGH200 |
Dr. Pawel Penczek |
|
11:30 - 12:30 |
PGH232&200 |
Tom Goddard |
|
12:30 - 1:30 |
Lunch |
||
1:30 - 3:00 |
PGH232&200 |
Dr. Steve Ludtke |
|
3:00 - 3:15 |
Coffee Break |
||
3:15 - 5:00 |
Tutorial 4 - Introduction to identification of conformational states in SPARX |
PGH232&200 |
Dr. Pawel Penczek |
5:15 - 6:15 |
Research Talk - Multiple states of a chaperonin and a method for analyzing heterogeneous conformations in cryo-EM |
PGH200 |
Dr. Junjie (George) Zhang |
6:30 - 9:00 |
Dinner |
UH Library |
Wed, Mar 16, 2011
Theme - Related methods
8:50 - 9:15 |
PGH232&200 |
Stephen Murray |
|
9:15 - 10:00 |
PGH200 |
Dr. Mike Schmid |
|
10:10 - 10:30 |
Coffee Break |
||
10:30 - 11:00 |
PGH200 |
Dr. Cathy Lawson |
|
11:00 - 11:45 |
PGH200&232 |
Dr. Greg Pintilie |
|
11:45 - 12:45 |
Lunch |
||
12:45 - 3:00 |
Tutorial 5 cont'd - Frealign, multirefine, etc. |
PGH200&232 |
Dr. Steve Ludtke & Stephen Murray |
3:00 - 3:30 |
Coffee Break |
||
3:30 - 5:00 |
PGH200&232 |
Jesus Montoya & Dr. John Flanagan |
|
5:10 - 6:10 |
Research Talk - Structural studies of Calcium release channels |
PGH200&232 |
Dr. Irina Serysheva |
7:00 - 9:00 |
Workshop Banquet Bus leaves U of H at 6:30 ! |
Fung’s Kitchen |
Thu, Mar 17, 2011
Theme: Validation & Modeling
9:00 - 10:00 |
PGH200 |
Dr. Richard Henderson |
|
10:00 - 10:30 |
Coffee Break |
||
10:30 - 11:30 |
PGH200/232 |
Dr. Gunnar Schroeder |
|
11:30 - 12:15 |
PGH200/232 |
Ian Rees |
|
12:15 - 1:00 |
Lunch |
||
1:00 - 2:30 |
PGH200/232 |
Dr. Yao Cong |
|
2:30 - 3:00 |
Coffee Break |
||
3:00 - 4:30 |
PGH200/232 |
Dr. Matt Baker |
|
4:30 - 5:30 |
Workshop wrap-up, final discussion |
Workshop Ends
Note: Wah will host a dinner for any speakers who will be around Thurs evening