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| This page contains the workshop schedule, and will contain the PDFs of each of the presentations at the workshop. Speakers are asked to upload their presentations sometime before the beginning of their talk (preferably as far in advance as possible). | |
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| This page contains the workshop schedule, and will contain the PDFs of each of the presentations at the workshop. Speakers are asked to upload their presentations sometime before the beginning of their talk (preferably as far in advance as possible). The data and software required for participation in the tutorial sessions can be found at: [[Workshop2011]]. |
The data and software required for participation in the tutorial sessions can be found at: [[Workshop2011]]. |
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| The main workshop page is here: [[http://ncmi.bcm.edu/ncmi/events/workshops/workshops_114]] | The main workshop page is here: http://ncmi.bcm.edu/ncmi/events/workshops/workshops_114 Note that PGH216 is an overflow room for the lectures in case the lecture hall becomes full for the talks. During the tutorial sessions, there will be plenty of seats in PGH232. |
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| ||8:00 - 8:50 ||Registration ||Outside PGH 200 || || ||8:50 - 9:10 ||Opening remarks/Introduction to Workshop ||PGH200 ||Dr. Steve Ludtke || ||9:10 - 10:00 ||[[attachment:1_1_chiu_microscopy.pdf|Cryo-EM Essentials]] ||PGH200 ||Dr. Wah Chiu || ||10:00 - 10:50 ||[[attachment:1_2_henderson_image_processing.pdf|Image processing theory]] ||PGH200 ||Dr. Richard Henderson || |
||8:00 - 8:50 ||Registration ||Outside PGH 232 || || ||8:50 - 9:10 ||Opening remarks/Introduction to Workshop ||PGH232 ||Dr. Steve Ludtke || ||9:10 - 10:00 ||[[attachment:1_1-Chiu_CryoEM.pdf|Cryo-EM Essentials]] ||PGH232 ||Dr. Wah Chiu || ||10:00 - 10:50 ||[[attachment:1_2_henderson_image_processing.pdf|Image processing theory|&do=get]] ||PGH232 ||Dr. Richard Henderson || |
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| ||11:20 - 12:30 ||[[attachment:1_3_ludtke_EMAN2.pdf|Tutorial 1 - Getting started with EMAN2, CTF & class-averages]] ||PGH232&200 ||Dr. Steve Ludtke || | ||11:20 - 12:30 ||[[attachment:1_3_ludtke_EMAN2.pdf|Tutorial 1 - Getting started with EMAN2, CTF & class-averages|&do=get]] ||PGH232&200 ||Dr. Steve Ludtke || || ||[[attachment:1_3_ludtke_EMAN2_slides.pdf|Tutorial 1 - Slides from presentation|&do=get]] || || || |
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| ||5:00 - 6:00 ||[[attachment:1_4_cong_TriC-CCT.pdf|Research Lecture: Structural studies of TriC/CCT]] ||PGH200 ||Dr. Yao Cong || ||6:00 - 9:00 ||Dinner onsite - with participant short talks ||PGH200 || || |
||5:00 - 6:00 ||[[attachment:1_4_cong_TriC-CCT.pdf|Research Lecture: Structural studies of TriC/CCT]] ||PGH232 ||Dr. Yao Cong || ||6:00 - 9:00 ||Dinner onsite - with participant short talks ||PGH232 || || |
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| ||9:00 - 10:00 ||[[attachment:2_1_egelman_IHRSR.pdf|Helical filaments, heterogeneity and polymorphisms]] ||PGH200 ||Dr. Edward Egelman || | ||9:00 - 10:00 ||[[attachment:2_1_egelman_IHRSR.pdf|Helical filaments, heterogeneity and polymorphisms]] ||PGH232 ||Dr. Edward Egelman || |
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| ||10:20 - 11:20 ||[[attachment:2_2_penczek_conformation.pdf|Identification of conformational states using resampling]] ||PGH200 ||Dr. Pawel Penczek || | ||10:20 - 11:20 ||[[attachment:2_2_penczek_conformation.pdf|Identification of conformational states using resampling]] ||PGH232 ||Dr. Pawel Penczek || |
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| ||1:30 - 3:00 ||[[attachment:2_4_ludtke_EMAN2.pdf|Tutorial 3 - Evaluating refinements, heterogeneity, etc.]] ||PGH232&200 ||Dr. Steve Ludtke || | ||1:30 - 3:00 ||[[attachment:2_4_ludtke_EMAN2.pdf|Tutorial 3 - Evaluating refinements, heterogeneity, etc.|&do=get]] ||PGH232&200 ||Dr. Steve Ludtke || || ||[[attachment:2_4a_ludtke_EMAN2.pdf|Tutorial 3 - Presentation slides for tutorial session|&do=get]] || || || |
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| ||5:15 - 6:15 ||[[attachment:2_6_zhang_mmcpn.pdf|Research Talk - Multiple states of a chaperonin and a method for analyzing heterogeneous conformations in cryo-EM]] ||PGH200 ||Dr. Junjie (George) Zhang || | ||5:15 - 6:15 ||[[attachment:2_6_zhang_mmcpn.pdf|Research Talk - Multiple states of a chaperonin and a method for analyzing heterogeneous conformations in cryo-EM]] ||PGH232 ||Dr. Junjie (George) Zhang || |
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| ||9:15 - 10:00 ||[[attachment:3_2_schmid_spt.pdf|Single particle tomography]] ||PGH200 ||Dr. Mike Schmid || | ||9:15 - 10:00 ||[[attachment:3_2_schmid_spt.pdf|Single particle tomography]] ||PGH232 ||Dr. Mike Schmid || |
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| ||10:30 - 11:00 ||[[attachment:3_3_lawson_PDB.pdf|EMDatabank.org & Data Archival]] [[attachment:3_3_lawson_EMdepGuide.pdf|Tutorial/Guide]]||PGH200 ||Dr. Cathy Lawson || | ||10:30 - 11:00 ||[[attachment:3_3_lawson_PDB.pdf|EMDatabank.org & Data Archival]] [[attachment:3_3_lawson_EMdepGuide.pdf|Tutorial/Guide]] ||PGH232 ||Dr. Cathy Lawson || |
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| ||12:45 - 3:00 ||Tutorial 5 cont'd - Frealign, multirefine, etc. ||PGH200&232 || Stephen Murray & Dr. Steve Ludtke || | ||12:45 - 3:00 ||Tutorial 5 cont'd - Frealign, multirefine, etc. ||PGH200&232 ||Stephen Murray & Dr. Steve Ludtke || |
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| ||3:30 - 5:00 ||[[attachment:3_5_galaz_spt.pdf|Tutorial 7 - Single Particle Tomography in EMAN2 |&do=get]] ||PGH200&232 ||Jesus Galaz & Dr. John Flanagan || ||5:10 - 6:10 ||[[attachment:3_6_serysheva_cachannels.pdf|Research Talk - Structural studies of Calcium release channels]] ||PGH200&232 ||Dr. Irina Serysheva || ||7:00 - 9:00 ||Workshop Banquet '''Bus leaves U of H at 6:30 !''' ||[[http://www.fungskitchen.com|Fung’s Kitchen]]|| || |
||3:30 - 5:00 ||[[attachment:3_5_galaz_spt.pdf|Tutorial 7 - Single Particle Tomography in EMAN2]] [[attachment:3_5_galaz_spt_ppt.pdf|Short PPT intro]]||PGH200&232 ||Jesus Galaz & Dr. John Flanagan || ||5:10 - 6:10 ||Research Talk - Structural studies of Calcium release channels ||PGH232 ||Dr. Irina Serysheva || ||7:00 - 9:00 ||Workshop Banquet '''Bus leaves U of H at 6:30 !''' ||[[http://www.fungskitchen.com|Fung’s Kitchen]] || || |
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| ||9:00 - 10:00 ||[[attachment:4_1_henderson_validation.pdf|Methods for Validation of Cryo-EM Maps]] ||PGH200 ||Dr. Richard Henderson || | ||9:00 - 10:00 ||[[attachment:4_1_henderson_validation.pdf|Methods for Validation of Cryo-EM Maps]] ||PGH232 ||Dr. Richard Henderson || |
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| ||10:30 - 11:30 ||[[attachment:4_2_schroeder_direx.pdf|Real-space Refinement of Atomic Models in DireX]] ||PGH200/232 ||Dr. Gunnar Schroeder || ||11:30 - 12:15 ||[[attachment:4_3_rees_emen2.pdf|The EMEN2 Electronic Notebook and OODB]] ||PGH200/232 ||Ian Rees || |
||10:30 - 11:30 ||Tutorial 8: [[attachment:4_2_schroeder_direx.pdf|Real-space Refinement of Atomic Models in DireX]] ||PGH200/232 ||Dr. Gunnar Schroeder || ||11:30 - 12:15 ||Tutorial 9: [[attachment:4_3_rees_emen2.pdf|The EMEN2 Electronic Notebook and OODB]] ||PGH200/232 ||Ian Rees || |
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| ||1:00 - 2:30 ||[[attachment:4_4_cong_rosetta.pdf|Introduction to Rosetta]] ||PGH200/232 ||Dr. Yao Cong || | ||1:00 - 2:30 ||Tutorial 10: [[attachment:4_4_cong_rosetta.pdf|Introduction to Rosetta]] ||PGH200/232 ||Dr. Yao Cong || |
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| ||3:00 - 4:30 ||[[attachment:4_5_baker_gorgon.pdf|Model Building and Analysis with Gorgon]] ||PGH200/232 ||Dr. Matt Baker || | ||3:00 - 4:30 ||Tutorial 11: [[attachment:4_5_baker_gorgon.pdf|Model Building and Analysis with Gorgon]] ||PGH200/232 ||Dr. Matt Baker || |
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''Note: Wah will host a dinner for any speakers who will be around Thurs evening'' |
NCMI Workshop on Single Particle Reconstruction, Validation and Analysis
March 14 - 17, 2011
This page contains the workshop schedule, and will contain the PDFs of each of the presentations at the workshop. Speakers are asked to upload their presentations sometime before the beginning of their talk (preferably as far in advance as possible).
The data and software required for participation in the tutorial sessions can be found at: Workshop2011.
Information on the location of the workshop and where to park is here: Ws2011/Location
The main workshop page is here: http://ncmi.bcm.edu/ncmi/events/workshops/workshops_114
Note that PGH216 is an overflow room for the lectures in case the lecture hall becomes full for the talks. During the tutorial sessions, there will be plenty of seats in PGH232.
Mon Mar 14, 2011
Theme - Single particle reconstruction
8:00 - 8:50 |
Registration |
Outside PGH 232 |
|
8:50 - 9:10 |
Opening remarks/Introduction to Workshop |
PGH232 |
Dr. Steve Ludtke |
9:10 - 10:00 |
PGH232 |
Dr. Wah Chiu |
|
10:00 - 10:50 |
PGH232 |
Dr. Richard Henderson |
|
11:00 - 11:20 |
Coffee Break |
|
|
11:20 - 12:30 |
Tutorial 1 - Getting started with EMAN2, CTF & class-averages |
PGH232&200 |
Dr. Steve Ludtke |
|
|
|
|
12:30 - 1:30 |
Lunch |
|
|
1:30 - 3:00 |
Tutorial 1, contd - Initial models |
PGH232&200 |
Dr. Steve Ludtke |
3:00 - 3:20 |
Coffee Break |
|
|
3:20 - 5:00 |
Tutorial 1, contd - First refinement & other issues |
PGH232&200 |
Dr. Steve Ludtke |
5:00 - 6:00 |
PGH232 |
Dr. Yao Cong |
|
6:00 - 9:00 |
Dinner onsite - with participant short talks |
PGH232 |
|
Tue Mar 15, 2011
Theme - Helices & Heterogeneity
9:00 - 10:00 |
PGH232 |
Dr. Edward Egelman |
|
10:00 - 10:20 |
Coffee Break |
|
|
10:20 - 11:20 |
PGH232 |
Dr. Pawel Penczek |
|
11:30 - 12:30 |
PGH232&200 |
Tom Goddard |
|
12:30 - 1:30 |
Lunch |
|
|
1:30 - 3:00 |
PGH232&200 |
Dr. Steve Ludtke |
|
|
|
|
|
3:00 - 3:15 |
Coffee Break |
|
|
3:15 - 5:00 |
Tutorial 4 - Introduction to identification of conformational states in SPARX |
PGH232&200 |
Dr. Pawel Penczek |
5:15 - 6:15 |
PGH232 |
Dr. Junjie (George) Zhang |
|
6:30 - 9:00 |
Dinner |
UH Library |
|
Wed, Mar 16, 2011
Theme - Related methods
8:50 - 9:15 |
PGH232&200 |
Stephen Murray |
|
9:15 - 10:00 |
PGH232 |
Dr. Mike Schmid |
|
10:10 - 10:30 |
Coffee Break |
|
|
10:30 - 11:00 |
PGH232 |
Dr. Cathy Lawson |
|
11:00 - 11:45 |
PGH200&232 |
Dr. Greg Pintilie |
|
11:45 - 12:45 |
Lunch |
|
|
12:45 - 3:00 |
Tutorial 5 cont'd - Frealign, multirefine, etc. |
PGH200&232 |
Stephen Murray & Dr. Steve Ludtke |
3:00 - 3:30 |
Coffee Break |
|
|
3:30 - 5:00 |
Tutorial 7 - Single Particle Tomography in EMAN2 Short PPT intro |
PGH200&232 |
Jesus Galaz & Dr. John Flanagan |
5:10 - 6:10 |
Research Talk - Structural studies of Calcium release channels |
PGH232 |
Dr. Irina Serysheva |
7:00 - 9:00 |
Workshop Banquet Bus leaves U of H at 6:30 ! |
|
Thu, Mar 17, 2011
Theme: Validation & Modeling
9:00 - 10:00 |
PGH232 |
Dr. Richard Henderson |
|
10:00 - 10:30 |
Coffee Break |
|
|
10:30 - 11:30 |
Tutorial 8: Real-space Refinement of Atomic Models in DireX |
PGH200/232 |
Dr. Gunnar Schroeder |
11:30 - 12:15 |
Tutorial 9: The EMEN2 Electronic Notebook and OODB |
PGH200/232 |
Ian Rees |
12:15 - 1:00 |
Lunch |
|
|
1:00 - 2:30 |
Tutorial 10: Introduction to Rosetta |
PGH200/232 |
Dr. Yao Cong |
2:30 - 3:00 |
Coffee Break |
|
|
3:00 - 4:30 |
Tutorial 11: Model Building and Analysis with Gorgon |
PGH200/232 |
Dr. Matt Baker |
4:30 - 5:30 |
Workshop wrap-up, final discussion |
|
Workshop Ends