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| ||8:50 - 9:10||Opening remarks/Introduction to Workshop||PGH200||Steve Ludtke and others|| ||9:10 - 10:00||[[attachment:1_1_chiu_microscopy.pdf|Introduction to transmission electron microscopy]]||PGH200||Wah Chiu|| ||10:00 - 10:50||[[attachment:1_2_henderson_image_processing.pdf|Image Processing Theory]]||PGH200||Richard Henderson||PGH200|| |
||8:50 - 9:10||Opening remarks/Introduction to Workshop||PGH200||Dr. Steve Ludtke and others|| ||9:10 - 10:00||[[attachment:1_1_chiu_microscopy.pdf|Introduction to transmission electron microscopy]]||PGH200||Dr. Wah Chiu|| ||10:00 - 10:50||[[attachment:1_2_henderson_image_processing.pdf|Image Processing Theory]]||PGH200||Dr. Richard Henderson||PGH200|| |
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| ||11:20 - 12:30||[[attachment:1_3_ludtke_EMAN2.pdf|Tutorial 1 - Getting started with EMAN2, CTF & Class-averages]]||PGH232&200||Steve Ludtke|| ||12:30 - 1:30||Lunch||Hall outside 200|| ||1:30 - 3:00||Tutorial 1, contd - Initial models||PGH232&200||Steve Ludtke|| |
||11:20 - 12:30||[[attachment:1_3_ludtke_EMAN2.pdf|Tutorial 1 - Getting started with EMAN2, CTF & Class-averages]]||PGH232&200||Dr. Steve Ludtke|| ||12:30 - 1:30||Lunch||PGH200 Hall|| ||1:30 - 3:00||Tutorial 1, contd - Initial models||PGH232&200||Dr. Steve Ludtke|| |
| Line 14: | Line 14: |
| ||3:20 - 5:00||Tutorial 1, contd - First refinement & other issues||PGH232&200||Steve Ludtke|| ||5:00 - 6:00||[[attachment:1_4_cong_TriC-CCT.pdf|Research Lecture: Structural studies of TriC/CCT]]||PGH200||Yao Cong|| |
||3:20 - 5:00||Tutorial 1, contd - First refinement & other issues||PGH232&200||Dr. Steve Ludtke|| ||5:00 - 6:00||[[attachment:1_4_cong_TriC-CCT.pdf|Research Lecture: Structural studies of TriC/CCT]]||PGH200||Dr. Yao Cong|| |
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| ||9:00 - 10:00||[[attachment:2_1_egelman_IHRSR.pdf|IHRSR]]||PGH200||Ed Egelman|| | ||9:00 - 10:00||[[attachment:2_1_egelman_IHRSR.pdf|IHRSR]]||PGH200||Dr. Edward Egelman|| |
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| ||10:20 - 11:20||[[attachment:2_2_penczek_conformation.pdf|Identification of conformational states using resampling]]||PGH200||Pawel Penczek|| | ||10:20 - 11:20||[[attachment:2_2_penczek_conformation.pdf|Identification of conformational states using resampling]]||PGH200||Dr. Pawel Penczek|| |
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| ||12:30 - 1:30||Lunch|| || ||1:30 - 3:00||[[attachment:2_4_ludtke_EMAN2.pdf|Tutorial 3 - Evaluating refinements, heterogeneity, etc.]]||PGH232&200||Steve Ludtke|| |
||12:30 - 1:30||Lunch||PGH200 Hall|| ||1:30 - 3:00||[[attachment:2_4_ludtke_EMAN2.pdf|Tutorial 3 - Evaluating refinements, heterogeneity, etc.]]||PGH232&200||Dr. Steve Ludtke|| |
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| ||3:15 - 5:00||[[attachment:2_5_penczek_SPARX.pdf|Tutorial 4 - Introduction to identification of conformational states in SPARX]]||PGH232&200||Pawel Penczek|| ||5:15 - 6:15||[[attachment:2_6_zhang_mmcpn.pdf|Research Talk - Multiple states of a chaperonin and a method for analyzing heterogeneous conformations in cryo-EM|| |
||3:15 - 5:00||[[attachment:2_5_penczek_SPARX.pdf|Tutorial 4 - Introduction to identification of conformational states in SPARX]]||PGH232&200||Dr. Pawel Penczek|| ||5:15 - 6:15||[[attachment:2_6_zhang_mmcpn.pdf|Research Talk - Multiple states of a chaperonin and a method for analyzing heterogeneous conformations in cryo-EM]]||PGH200||Dr. Junjie (George) Zhang|| |
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| ||'''8:50 - 9:15'''||[[attachment:3_1_murray_frealign.pdf|Quick morning tutorial session]]||'''PGH232&200'''||Stephen Murray|| ||9:15 - 10:00||[[attachment:3_2_schmid_spt.pdf|Single Particle Tomography]]||PGH200||Mike Schmid|| |
||'''8:50 - 9:15'''||[[attachment:3_1_murray_frealign.pdf|Tutorial 5 - Quick morning tutorial session]]||'''PGH232&200'''||Stephen Murray|| ||9:15 - 10:00||[[attachment:3_2_schmid_spt.pdf|Single Particle Tomography]]||PGH200||Dr. Mike Schmid|| |
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| ||10:30 - 11:00||[[attachment:3_3_lawson_PDB.pdf|Single Particle Tomography]]||PGH200||Cathy Lawson|| Practicals (Computer classroom & Laptops in the lecture hall) 11:00 - 11:45 Greg Pinitilie Segger 11:45 - 12:45 Lunch 12:45 - 3:00 Multirefine EMAN2/Frealign Other topics 3:00 - 3:30 Break 3:30 - 5:00 Mike Schmid/Jesus Montoya Single particle tomography tutorial 5:10 - 6:10 Research Talk Irina Serysheva Structural studies of Calcium release channels 6:30 - Banquet at Fung’s Kitchen Bus leaves U of H at 6:30 |
||10:30 - 11:00||[[attachment:3_3_lawson_PDB.pdf|EMDatabank.org & Data Archival]]||PGH200||Dr. Cathy Lawson|| ||11:00 - 11:45||[[attachment:3_4_pintilie_segger.pdf|Tutorial 6 - Segmentation with Segger]]||PGH200&232||Dr. Greg Pintilie|| ||11:45 - 12:45||Lunch||PGH200 Hall|| ||12:45 - 3:00||Tutorial 5 cont'd - Frealign, multirefine, etc.||PGH200&232||Dr. Steve Ludtke & Stephen Murray|| ||3:00 - 3:30||Coffee Break||PGH200 hall|| ||3:30 - 5:00||[[attachment:3_5_montoya_spt.pdf|Tutorial 7 - Single Particle Tomography in EMAN2]]||PGH200&232||Jesus Montoya & Dr. John Flanagan|| ||5:10 - 6:10||[[attachment:3_6_serysheva_cachannels.pdf|Research Talk - Structural studies of Calcium release channels]]||PGH200&232||Dr. Irina Serysheva|| ||7:00 - 9:00||Workshop Banquet at Fung’s Kitchen '''Bus leaves U of H at 6:30 !'''|| |
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| Morning Lectures (Main lecture hall) 9:00 - 10:00 Richard Henderson Validating maps with tilt data Resolution 10:00 - 10:30 Break 10:30 - 11:30 Gunnar Schroeder DireX |
||9:00 - 10:00||[[attachment:4_1_henderson_validation.pdf|Methods for Validation of Cryo-EM Maps]]||PGH200||Dr. Richard Henderson|| ||10:00 - 10:30||Coffee Break||PGH200 hall|| ||10:30 - 11:30||[[attachment:4_2_schroeder_direx.pdf|Real-space Refinement of Atomic Models in DireX]]||PGH200/232||Dr. Gunnar Schroeder|| ||11:30 - 12:15||[[attachment:4_3_rees_emen2.pdf|The EMEN2 Electronic Notebook and OODB]]||PGH200/232||Ian Rees|| ||12:15 - 1:00||Lunch||PGH200 Hall|| ||1:00 - 2:30||[[attachment:4_4_cong_rosetta.pdf|Introduction to Rosetta]]||PGH200/232||Dr. Yao Cong|| ||2:30 - 3:00||Coffee Break||PGH200 Hall|| ||3:00 - 4:30||[[attachment:4_5_baker_gorgon.pdf|Model Building and Analysis with Gorgon]]||PGH200/232||Dr. Matt Baker|| ||4:30 - 5:30||Workshop wrap-up, final discussion|| |
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| Practicals (Computer classroom & Laptops in the lecture hall) 11:30 - 12:15 Ian Rees EMEN2 Tutorial and demo 12:15 - 1:00 Lunch |
'''''Workshop Ends''''' |
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| 1:00 - 2:30 Yao Cong Rosetta Introduction and Tutorial 2:30 - 3:00 Break 3:00 - 4:30 Matt Baker Gorgon Introduction and Tutorial 4:30 - 5:30 Workshop wrap-up, final issues workshop ends 6:00 Speaker dinner |
''Note: Wah will host a dinner for any speakers who will be around Thurs evening'' |
Mon Mar 14, 2011
Theme - Single particle reconstruction
8:00 - 8:50 |
Registration |
Outside PGH 200 |
||
8:50 - 9:10 |
Opening remarks/Introduction to Workshop |
PGH200 |
Dr. Steve Ludtke and others |
|
9:10 - 10:00 |
PGH200 |
Dr. Wah Chiu |
||
10:00 - 10:50 |
PGH200 |
Dr. Richard Henderson |
PGH200 |
|
11:00 - 11:20 |
Coffee Break |
PGH200 Hall |
||
11:20 - 12:30 |
Tutorial 1 - Getting started with EMAN2, CTF & Class-averages |
PGH232&200 |
Dr. Steve Ludtke |
|
12:30 - 1:30 |
Lunch |
PGH200 Hall |
||
1:30 - 3:00 |
Tutorial 1, contd - Initial models |
PGH232&200 |
Dr. Steve Ludtke |
|
3:00 - 3:20 |
Coffee Break |
PGH200 Hall |
||
3:20 - 5:00 |
Tutorial 1, contd - First refinement & other issues |
PGH232&200 |
Dr. Steve Ludtke |
|
5:00 - 6:00 |
PGH200 |
Dr. Yao Cong |
||
6:00 - 9:00 |
Dinner - with participant short talks |
PGH200 |
Tue Mar 15, 2011
Theme - Helices & Heterogeneity
9:00 - 10:00 |
PGH200 |
Dr. Edward Egelman |
|
10:00 - 10:20 |
Coffee Break |
PGH200 Hall |
|
10:20 - 11:20 |
PGH200 |
Dr. Pawel Penczek |
|
11:30 - 12:30 |
PGH232&200 |
Tom Goddard |
|
12:30 - 1:30 |
Lunch |
PGH200 Hall |
|
1:30 - 3:00 |
PGH232&200 |
Dr. Steve Ludtke |
|
3:00 - 3:15 |
Coffee Break |
PGH200 Hall |
|
3:15 - 5:00 |
Tutorial 4 - Introduction to identification of conformational states in SPARX |
PGH232&200 |
Dr. Pawel Penczek |
5:15 - 6:15 |
PGH200 |
Dr. Junjie (George) Zhang |
|
6:30 - 9:00 |
Dinner |
Library/Hilton |
Wed, Mar 16, 2011
Theme - Related methods
8:50 - 9:15 |
PGH232&200 |
Stephen Murray |
|
9:15 - 10:00 |
PGH200 |
Dr. Mike Schmid |
|
10:10 - 10:30 |
Coffee Break |
PGH200 Hall |
|
10:30 - 11:00 |
PGH200 |
Dr. Cathy Lawson |
|
11:00 - 11:45 |
PGH200&232 |
Dr. Greg Pintilie |
|
11:45 - 12:45 |
Lunch |
PGH200 Hall |
|
12:45 - 3:00 |
Tutorial 5 cont'd - Frealign, multirefine, etc. |
PGH200&232 |
Dr. Steve Ludtke & Stephen Murray |
3:00 - 3:30 |
Coffee Break |
PGH200 hall |
|
3:30 - 5:00 |
PGH200&232 |
Jesus Montoya & Dr. John Flanagan |
|
5:10 - 6:10 |
Research Talk - Structural studies of Calcium release channels |
PGH200&232 |
Dr. Irina Serysheva |
7:00 - 9:00 |
Workshop Banquet at Fung’s Kitchen Bus leaves U of H at 6:30 ! |
Thu, Mar 17, 2011
Theme: Validation & Modeling
9:00 - 10:00 |
PGH200 |
Dr. Richard Henderson |
|
10:00 - 10:30 |
Coffee Break |
PGH200 hall |
|
10:30 - 11:30 |
PGH200/232 |
Dr. Gunnar Schroeder |
|
11:30 - 12:15 |
PGH200/232 |
Ian Rees |
|
12:15 - 1:00 |
Lunch |
PGH200 Hall |
|
1:00 - 2:30 |
PGH200/232 |
Dr. Yao Cong |
|
2:30 - 3:00 |
Coffee Break |
PGH200 Hall |
|
3:00 - 4:30 |
PGH200/232 |
Dr. Matt Baker |
|
4:30 - 5:30 |
Workshop wrap-up, final discussion |
Workshop Ends
Note: Wah will host a dinner for any speakers who will be around Thurs evening