Results 1 - 25 of 109 results out of about 4270 pages. (3.59 seconds)
- EMAN2/COMPILE_EMAN2_ANACONDA-PRE-CONDA-ENVIRONMENTS . . . 34 matches
- ...d Build, All Platforms =
These instructions are for building with '''!NumPy v1.13'''.
EMAN2 source lives on !GitHub, downloading the source is part of the instructions below. Sin...
- EMAN2/Install/BinaryInstallAnaconda/2.99 . . . 62 matches
- ...t odd, but this IS a release version''
== Choices ==
There are three ways to install EMAN2:
1. Traditional Binary Installation (includes Anaconda/Miniconda install)
* [[#Lin...
- EMAN2 . . . 59 matches
- ...= EMAN2.99.47 =
Most of the pages are editable by any user that has registered an account on the server. To prevent spam, you need to email sludtke@bcm.edu to get an account on th...
- EMAN2/Tutorials . . . 58 matches
- ...= EMAN2 Introductory Tutorials =
''Please note that we are continuously developing and updating the tutorials. Most tutorials include the necessary data. If you have a request for...
- Eman2AppMetadata . . . 50 matches
- ...bsolete =
== Global dictionaries/parameters ==
=== 00image_counts database ===
Every EMAN2DB directory will contain an image count cache database which will contain a number of ...
- EMAN2/Programs . . . 50 matches
- ...== EMAN2 Programs ==
'''This page is very incomplete, but running any EMAN2 program with the '--help' option will provide documentation for that program.'''
== Generic Docs ==
...
- EMAN2/Install/SourceInstall . . . 48 matches
- ...
{{{#!html
<h1 style="margin-bottom:5px;"> Building EMAN2/SPARX/SPHIRE from Source </h1>
<p style="font-size:110%; text-align:center; margin-top:5px; margin-left:20px; margin-r...
- EMAN2/Install/BinaryInstallAnaconda/ContinuousBuild . . . 46 matches
- ...<<TableOfContents()>>
= Conda Installation Instructions =
EMAN2 is now available as a conda package from our channel "cryoem" on anaconda.org. It can be installed via conda/...
- EMAN2/Install . . . 44 matches
- ...= Installing EMAN2 / SPHIRE =
=== Conda Installation of eman-dev ===
[[EMAN2/Install/CondaInstall|Install EMAN2 in a conda environment]]
=== Binary Installation (most users sh...
- EMAN2/Eman1Transition/Eman1v2 . . . 44 matches
- ...= An overview of changes between EMAN1 and EMAN2 =
We have tried to preserve as many of the conventions from EMAN1 as possible, to limit the
difficulty in making the transition. ...
- EMAN2/Install/BinaryInstallAnaconda/2.91 . . . 42 matches
- ...Instructions v2.91</h1>
}}}
<<TableOfContents()>>
'''''Note: If you need to install EMAN2 within an existing Anaconda installation, please follow the source installation instru...
- EMAN2/Library . . . 38 matches
- ...= Documentation for Python or C++ Programmers ===
==== Introductory concepts ====
* [[EMAN2PythonStyleGuide|EMAN2 Python Programming Style Guide]]
* [[Eman2ProgQuickstart|EMAN2 ...
- EMAN2/Install/SourceInstall/2.31 . . . 38 matches
- ...d Build, All Platforms =
These instructions are for building with '''!NumPy v1.13'''.
EMAN2 source lives on !GitHub, downloading the source is part of the instructions below. Sin...
- EMAN2/DatabaseWarning . . . 35 matches
- ...NOTE: This page really only applies to EMAN2.0x. If you are using EMAN2.1+, you should no longer have any of these issues, since BDB has been deprecated in favor of HDF and JSON f...
- EMAN2/e2TomoSmall . . . 33 matches
- ...= EMAN2 Tomography and Subtomogram/Subtilt Averaging Workflow Tutorial =
'''''Important note: Throughout the tutorial you will see a split between (small) and (large) instructions...
- EMAN2/Programs/e2refine . . . 32 matches
- ...== e2refine ==
This program is the heart of single particle reconstruction in EMAN2. It embodies the concept of an iterative 3-D single particle reconstruction in a single step, ...
- EMAN2/ImageFormats . . . 30 matches
- ...
<<TableOfContents>>
= Table of supported image formats in EMAN2 =
||Type ||Extension ||Read ||Write ||3D ||Image Stacks ||Volume Stacks ||Bit Trunc. ||Region I/O ||Comments ||
|...
- EMAN2/Concepts . . . 30 matches
- ...= EMAN2 Concepts and Conventions =
=== Box Size (Important) ===
* Particle [[EMAN2/BoxSize|box-size]] - Impacts quality and speed of reconstructions!
=== Data Storage ===
* Su...
- EMAN2/Important . . . 28 matches
- ...= Important Information =
== For Everyone ==
* '''Working with Images''' - EMAN2 has '''many''' [[EMAN2/Modular/Overview|general image processing methods]], and the list is cont...
- EMAN2/FAQ . . . 25 matches
- ...Our [[https://groups.google.com/forum/#!forum/eman2|Google Group]] is now the primary place for ongoing EMAN2 discussions.
'''General:'''
* [[EMAN2/FAQ/CiteEman2|What paper sho...
- Eman2DataStorage . . . 24 matches
- ...== Image Data files in EMAN2 ==
Virtually all cryo-EM file formats are supported as well as some good generic formats. The default format used in EMAN2 processing is HDF5, which ...
- EMAN2/Programs/e2refinemulti . . . 24 matches
- ...== e2refinemulti ==
This is a variant of the standard [[EMAN2/Programs/e2refine|e2refine]] program. This version performs so-called multi-model refinement. Rather than producing
...
- EMAN2/VideoTutorials . . . 22 matches
- ...== Video Tutorials for EMAN2 ==
We are now hosting periodic live video-conferences/telecasts to discuss specific EMAN2 topics, in addition to some short tutorial videos. These tel...
- EMAN2/Eman1Transition/CommandLine . . . 22 matches
- ...= Transitioning from EMAN1 to EMAN2 with command line tools =
While the workflow is the correct choice for many users, we realize that some prefer to manipulate their data more d...
- EMAN2/e2tomo . . . 19 matches
- ...
= EMAN2 Tomography Workflow Tutorial =
* This tutorial is best suited for EMAN2 built after 09/27/2018. Not everything described in the tutorial was functioning yet in the 2.2...