Video Tutorials for EMAN2

These are short (<10 min each) video demos of various aspects of the EMAN2 system. They are also available on YouTube, search for sludtke42. This is still a work in progress. Only a portion of these planned videos have been completed

Introduction

• 1.0 Introduction to EMAN2 GUI (Graphical User Interface)

• 1.1 Overview of the EMAN2 system

• 1.2 Installing EMAN2

Users

• 2 Overview for Users
  • 2.1 Introduction to Command-line programs
  • 2.2 Workflow Interface
    • 2.2.1 Single Particle Reconstruction
      • 2.2.1.1 Starting a Project
      • 2.2.1.2 Picking Particles
      • 2.2.1.3 CTF Correction
      • 2.2.1.4 Building Sets
      • 2.2.1.5 2-D Reference Free Class Averages
      • 2.2.1.6 Making an Initial Model
      • 2.2.1.7 Running a Refinement
      • 2.2.1.8 Evaluating your Results
    • 2.2.2 Single Particle Tomography
      • 2.2.2.1 Introduction

Programmers

• 3. Introduction to EMAN2 Programming
• 3.1 Python (Quickstart)
  • 3.1.1 Overview of Classes
• 3.2 C++
  • 3.2.1 Establishing a build environment

Longer presentations from workshops

• EMAN2 introduction from SCANDEM 2010 (30 min)

• First part of an EMAN2 demonstration session from SCANDEM 2010 (~2 hr)

• Second part of an EMAN2 demonstration session from SCANDEM 2010 (~2 hr)