|
Size: 2308
Comment:
|
Size: 2337
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 10: | Line 10: |
| ==== Single particle analysis (SPA) - 2D particles==== | ==== Single particle analysis (SPA) - 2D particles ==== |
| Line 15: | Line 15: |
| * [[Ws2011/Eman2|The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01 (Data on same page)]] * [[attachment:rct_tutorial.pdf|Tutorial on using EMAN2 for Random Conical Tilt reconstructions]] (not complete) |
* [[OxfordWs2012|The Validation tutorial from the Oxford 2012 EMAN2 workshop, compatible with EMAN Nightly Build (Data on same page)]] * [[attachment:rct_tutorial.pdf|Tutorial on using EMAN2 for Random Conical Tilt reconstructions]] |
| Line 19: | Line 19: |
| ==== Single particle tomography (SPT) - 3D particles==== | ==== Single particle tomography (SPT) - 3D particles ==== |
| Line 22: | Line 22: |
| * UPDATED on July 4, 2011. '''It SHOULD be a valid PDF'''. If not, please report it, and try to open in with OpenOffice or Word. |
|
| Line 26: | Line 24: |
| * [[attachment:population_dynamics_2009_11.pdf|Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics]] | * [[attachment:population_dynamics_2009_11.pdf|Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics]] (under construction) ==== Adding an e2program to the program manger workflow ==== * [[EMAN2PMWorkflow|Modifying the EMAN2 projectmanager workflow]] |
EMAN2 TUTORIALS
Beginners (introductory tutorials)
Please note that we are continuously developing and updating the tutorials. Items that are greyed out are planned but the tutorials have not yet been completed. If you have a request for a particular tutorial please feel free to email sludtke@bcm.edu.
Single particle analysis (SPA) - 2D particles
The old SPR tutorial (2008 Workshop) - Full tutorial on single particle reconstruction using the workflow (uses Workshop demo data DVD)
The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01 (Data on same page)
Tutorial on using EMAN2 for Random Conical Tilt reconstructions
Single particle tomography (SPT) - 3D particles
- NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial at the 2011 EMAN2 workshop].
2D assessment of heterogeneity
Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics (under construction)
Adding an e2program to the program manger workflow
Advanced (EMAN2 through the ''e2.py'' Python prompt)
* Generate and display an EMAN2 test image
* Rotate, translate, scale or mirror an image
* Add and multiply images, add and multiply by constants
* Convert a real/imaginary image into an amplitude/phase image and vice versa
* Iterate through the pixels of an image
* Make a projection of a 3D model, project through the asymmetric unit
