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==== 2D single particle analysis (SPA) ==== ''Please note that we are continuously developing and updating the tutorials. Items that are greyed out
are planned but the tutorials have not yet been completed. If you have a request for a particular tutorial
please feel free to email sludtke@bcm.edu.''
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 * The old SPR tutorial - [[attachment:workflow_tutorial_2010_08_25.pdf|Full tutorial on single particle reconstruction using the workflow]] (uses [[http://blake.grid.bcm.edu/dl/data/workshop5.iso|Workshop demo data DVD]])
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==== Single particle analysis (SPA) - 2D particles====

 * [[EMAN2/Eman1Transition|EMAN1 to EMAN2 Transition Guide]]
 * The old SPR tutorial (2008 Workshop) - [[attachment:workflow_tutorial_2010_08_25.pdf|Full tutorial on single particle reconstruction using the workflow]] (uses [[http://blake.grid.bcm.edu/dl/data/workshop5.iso|Workshop demo data DVD]])
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 * [[OxfordWs2012|The Validation tutorial from the Oxford 2012 EMAN2 workshop, compatible with EMAN Nightly Build (Data on same page)]]
 * [[attachment:rct_tutorial.pdf|Tutorial on using EMAN2 for Random Conical Tilt reconstructions]]
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==== 3D single particle tomography (SPT) ====
==== Single particle tomography (SPT) - 3D particles====
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 * UPDATED on April 18, 2011. '''It SHOULD be a valid PDF'''. If not, please report it, and try to open in with OpenOffice or Word.  * UPDATED on July 4, 2011. '''It SHOULD be a valid PDF'''. If not, please report it, and try to open in with OpenOffice or Word.

EMAN2 TUTORIALS

Beginners (introductory tutorials)

Please note that we are continuously developing and updating the tutorials. Items that are greyed out are planned but the tutorials have not yet been completed. If you have a request for a particular tutorial please feel free to email sludtke@bcm.edu.

==== Single particle analysis (SPA) - 2D particles====

==== Single particle tomography (SPT) - 3D particles====

  • NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial at the 2011 EMAN2 workshop].

    e2spt_users_guide.pdf

  • UPDATED on July 4, 2011. It SHOULD be a valid PDF. If not, please report it, and try to open in with OpenOffice or Word.

2D assessment of heterogeneity

Advanced (EMAN2 through the ''e2.py'' Python prompt)

* Generate and display an EMAN2 test image

* Rotate, translate, scale or mirror an image

* Add and multiply images, add and multiply by constants

* Convert a real/imaginary image into an amplitude/phase image and vice versa

* Iterate through the pixels of an image

* Make a projection of a 3D model, project through the asymmetric unit

2d_image_3dplot_2.png

* Change log level in EMAN2

EMAN2/Tutorials (last edited 2024-04-05 01:51:27 by MuyuanChen)