Differences between revisions 53 and 73 (spanning 20 versions)
Revision 53 as of 2011-04-18 13:18:08
Size: 1643
Editor: zoo2cluster15
Comment: maybe a typo within the filename?
Revision 73 as of 2012-05-11 18:22:32
Size: 2520
Editor: JohnFlanagan
Comment:
Deletions are marked like this. Additions are marked like this.
Line 5: Line 5:
==== 2D single particle analysis (SPA) ====

 * The old SPR tutorial - [[attachment:workflow_tutorial_2010_08_25.pdf|Full tutorial on single particle reconstruction using the workflow]] (uses [[http://blake.grid.bcm.edu/dl/data/workshop5.iso|Workshop demo data DVD]])

 * [[Ws2011/Eman2|The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01]]

==== 3D single particle tomography (SPT) ====
 * NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial at the 2011 EMAN2 workshop].
 [[attachment:e2spt_users_guide.pdf| e2spt_users_guide.pdf|&do=get]]
 * '''this is not a valid pdf file''', but it is accessible with openoffice
''Please note that we are continuously developing and updating the tutorials. Items that are greyed out
are planned but the tutorials have not yet been completed. If you have a request for a particular tutorial
please feel free to email sludtke@bcm.edu.''
Line 17: Line 10:
==== Single particle analysis (SPA) - 2D particles ====

 * [[EMAN2/Eman1Transition|EMAN1 to EMAN2 Transition Guide]]
 * The old SPR tutorial (2008 Workshop) - [[attachment:workflow_tutorial_2010_08_25.pdf|Full tutorial on single particle reconstruction using the workflow]] (uses [[http://blake.grid.bcm.edu/dl/data/workshop5.iso|Workshop demo data DVD]])
 * [[Ws2011/Eman2|The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01 (Data on same page)]]
 * [[OxfordWs2012|The Tilt Validation tutorial from the Oxford 2012 EMAN2 workshop, compatible with EMAN Nightly Build (Data on same page)]]
 * [[attachment:rct_tutorial.pdf|Tutorial on using EMAN2 for Random Conical Tilt reconstructions|&do=get]]
 * [[attachment:rct_tutorial_sim.pdf|Tutorial on using EMAN2 for Random Conical Tilt reconstructions using simulated data|&do=get]]
 * [[attachment:rct_tutorial_simulated.tgz|Dataset for the RCT tutorial using simulated data|&do=get]]


==== Single particle tomography (SPT) - 3D particles ====
 * NEW single particle tomography USERS' GUIDE.
 [[attachment:e2spt_users_guide.pdf| e2spt_users_guide.pdf|&do=get]]
Line 18: Line 26:
 * [[attachment:population_dynamics_2009_11.pdf|Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics]]  * [[attachment:population_dynamics_2009_11.pdf|Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics]] (under construction)

==== Adding an e2program to the program manger workflow ====
 * [[EMAN2PMWorkflow|Modifying the EMAN2 projectmanager workflow]]

EMAN2 TUTORIALS

Beginners (introductory tutorials)

Please note that we are continuously developing and updating the tutorials. Items that are greyed out are planned but the tutorials have not yet been completed. If you have a request for a particular tutorial please feel free to email sludtke@bcm.edu.

Single particle analysis (SPA) - 2D particles

Single particle tomography (SPT) - 3D particles

2D assessment of heterogeneity

Adding an e2program to the program manger workflow

Advanced (EMAN2 through the ''e2.py'' Python prompt)

* Generate and display an EMAN2 test image

* Rotate, translate, scale or mirror an image

* Add and multiply images, add and multiply by constants

* Convert a real/imaginary image into an amplitude/phase image and vice versa

* Iterate through the pixels of an image

* Make a projection of a 3D model, project through the asymmetric unit

2d_image_3dplot_2.png

* Change log level in EMAN2

EMAN2/Tutorials (last edited 2024-04-05 01:51:27 by MuyuanChen)