|
Size: 1537
Comment:
|
Size: 2550
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| == Beginners: Introductory Tutorials == | = EMAN2 TUTORIALS = |
| Line 3: | Line 3: |
| ==== 2D single particle analysis ==== | == Beginners (introductory tutorials) == |
| Line 5: | Line 5: |
| * The old SPR tutorial - [[attachment:workflow_tutorial_2010_08_25.pdf|Full tutorial on single particle reconstruction using the workflow]] (uses [[http://blake.grid.bcm.edu/dl/data/workshop5.iso|Workshop demo data DVD]]) * [[Ws2011/Eman2|The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01]] ==== 3D single particle tomography ==== * NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial from the 2011 EMAN2 workshop]. [[attachment:e2spt_users_guide.pdf| e2spt_users_guide.pdf|&do=get]] |
''Please note that we are continuously developing and updating the tutorials. Items that are greyed out are planned but the tutorials have not yet been completed. Most tutorials include the necessary data. If you have a request for a particular tutorial please feel free to email sludtke@bcm.edu.'' |
| Line 15: | Line 10: |
| ==== Single particle analysis (SPA) - 2D particles ==== * [[EMAN2/Eman1Transition|EMAN1 to EMAN2 Transition Guide]] - Also with useful quickstart guides for users of other software * [[Ws2011/Eman2|Tutorial from the 2011 EMAN2 workshop (Data on same page)]] - Based on EMAN2.01. Full single particle reconstruction tutorial * [[OxfordWs2012|Tilt Validation tutorial from the Oxford 2012 mini-workshop]] - Requires EMAN 2.05+ * [[RctTutorial|Random Conical Tilt Tutorial]] - Requires EMAN 2.05+ Obsolete tutorials still provided for data access, etc. * Single particle reconstruction tutorial from 2008 Workshop ( - [[attachment:workflow_tutorial_2010_08_25.pdf|Full tutorial on single particle reconstruction using the workflow]] (uses [[http://blake.grid.bcm.edu/dl/data/workshop5.iso|Workshop demo data DVD]]) ==== Single particle tomography (SPT) - 3D particles ==== * [[Ws2011/Spt|EMAN2 Workshop 2010 and NUS Workshop 2012, Single particle tomography]] - Requires EMAN 2.05+ * Data needed for the User's Guide up to 06/2012 [[http://blake.grid.bcm.edu/wikifiles/SPT/e2spt_data.zip|e2spt_data.zip]] |
|
| Line 16: | Line 28: |
| * [[attachment:population_dynamics_2009_11.pdf|Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics]] | * [[attachment:population_dynamics_2009_11.pdf|Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics]] (under construction) |
| Line 18: | Line 30: |
| == Advanced Users: Using EMAN2 through a Python prompt (e2.py) == | ==== Adding an e2program to the program manger workflow ==== * [[EMAN2PMWorkflow|Modifying the EMAN2 projectmanager workflow]] == Advanced (EMAN2 through the ''e2.py'' Python prompt) == |
EMAN2 TUTORIALS
Beginners (introductory tutorials)
Please note that we are continuously developing and updating the tutorials. Items that are greyed out are planned but the tutorials have not yet been completed. Most tutorials include the necessary data. If you have a request for a particular tutorial please feel free to email sludtke@bcm.edu.
Single particle analysis (SPA) - 2D particles
EMAN1 to EMAN2 Transition Guide - Also with useful quickstart guides for users of other software
Tutorial from the 2011 EMAN2 workshop (Data on same page) - Based on EMAN2.01. Full single particle reconstruction tutorial
Tilt Validation tutorial from the Oxford 2012 mini-workshop - Requires EMAN 2.05+
Random Conical Tilt Tutorial - Requires EMAN 2.05+
Obsolete tutorials still provided for data access, etc.
Single particle reconstruction tutorial from 2008 Workshop ( - Full tutorial on single particle reconstruction using the workflow (uses Workshop demo data DVD)
Single particle tomography (SPT) - 3D particles
EMAN2 Workshop 2010 and NUS Workshop 2012, Single particle tomography - Requires EMAN 2.05+
- Data needed for the User's Guide up to 06/2012
2D assessment of heterogeneity
Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics (under construction)
Adding an e2program to the program manger workflow
Advanced (EMAN2 through the ''e2.py'' Python prompt)
* Generate and display an EMAN2 test image
* Rotate, translate, scale or mirror an image
* Add and multiply images, add and multiply by constants
* Convert a real/imaginary image into an amplitude/phase image and vice versa
* Iterate through the pixels of an image
* Make a projection of a 3D model, project through the asymmetric unit
