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| This page has links to very short demos/tutorials in EMAN2. Please forward any requests to the EMAN2 developors. | = EMAN2 TUTORIALS = |
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| == Beginners : Introductory Tutorials == * [[attachment:workflow_tutorial_2010_08_25.pdf|Full tutorial on single particle reconstruction using the workflow]] (uses [[http://blake.grid.bcm.edu/dl/data/workshop5.iso|Workshop demo data DVD]]) |
== Beginners (introductory tutorials) == |
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| * [[attachment:sp_cryoet_tutorial_2009_11.pdf|Tutorial slides from presentation on single particle electron cryotomography (3-D particle averaging)]] <--- While you can still download this, we are in the process of a complete overhaul of SPT, so it is of limited usefulness | ==== 2D single particle analysis (SPA) ==== |
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| * [[attachment:population_dynamics_2009_11.pdf|Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics]] | * The old SPR tutorial - [[attachment:workflow_tutorial_2010_08_25.pdf|Full tutorial on single particle reconstruction using the workflow]] (uses [[http://blake.grid.bcm.edu/dl/data/workshop5.iso|Workshop demo data DVD]]) |
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| == Advanced Users : Using EMAN2 through a Python prompt (e2.py) == | * [[Ws2011/Eman2|The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01]] ==== 3D single particle tomography (SPT) ==== * NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial at the 2011 EMAN2 workshop]. [[attachment:e2spt_users_guide.pdf| e2spt_users_guide.pdf|&do=get]] * '''this is not a valid pdf file''', but it is accessible with openoffice ==== 2D assessment of heterogeneity ==== * [[attachment:population_dynamics_2009_11.pdf|Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics]] == Advanced (EMAN2 through the ''e2.py'' Python prompt) == |
EMAN2 TUTORIALS
Beginners (introductory tutorials)
2D single particle analysis (SPA)
The old SPR tutorial - Full tutorial on single particle reconstruction using the workflow (uses Workshop demo data DVD)
The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01
3D single particle tomography (SPT)
- NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial at the 2011 EMAN2 workshop].
this is not a valid pdf file, but it is accessible with openoffice
2D assessment of heterogeneity
Advanced (EMAN2 through the ''e2.py'' Python prompt)
* Generate and display an EMAN2 test image
* Rotate, translate, scale or mirror an image
* Add and multiply images, add and multiply by constants
* Convert a real/imaginary image into an amplitude/phase image and vice versa
* Iterate through the pixels of an image
* Make a projection of a 3D model, project through the asymmetric unit
