Differences between revisions 12 and 52 (spanning 40 versions)

EMAN2 TUTORIALS

Beginners (introductory tutorials)

2D single particle analysis (SPA)

The old SPR tutorial - Full tutorial on single particle reconstruction using the workflow (uses Workshop demo data DVD)
The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01

3D single particle tomography (SPT)

NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial at the 2011 EMAN2 workshop].
e2spt_users_guide.pdf

2D assessment of heterogeneity

Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics

Advanced (EMAN2 through the ''e2.py'' Python prompt)

* Generate and display an EMAN2 test image

* Rotate, translate, scale or mirror an image

* Add and multiply images, add and multiply by constants

* Convert a real/imaginary image into an amplitude/phase image and vice versa

* Iterate through the pixels of an image

* Make a projection of a 3D model, project through the asymmetric unit

* Change log level in EMAN2

-  ⇤ ← Revision 12 as of 2008-02-12 23:04:05 → 
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+   ← Revision 52 as of 2011-03-22 21:28:01 → ⇥
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-== Using e2.py ==
* [:EMAN2/Galleries/Testimages:Generate and display an EMAN2 test image]
+= EMAN2 TUTORIALS =
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-* [:EMAN2/Tutorials/RotateTranslate:Rotate and translate an image]
+== Beginners (introductory tutorials) ==
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-* [:EMAN2/Tutorials/AddAndMultiply:Add images, and multiply by a constant]
+==== 2D single particle analysis (SPA) ====
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-* [:EMAN2/Tutorials/ri2ap:Convert a real/imaginary image into an amplitude/phase image and vice versa]
+ * The old SPR tutorial - [[attachment:workflow_tutorial_2010_08_25.pdf|Full tutorial on single particle reconstruction using the workflow]] (uses [[http://blake.grid.bcm.edu/dl/data/workshop5.iso|Workshop demo data DVD]])

 * [[Ws2011/Eman2|The NEW tutorial from the 2011 EMAN2 workshop, compatible with EMAN 2.01]]

==== 3D single particle tomography (SPT) ====
 * NEW single particle tomography USERS' GUIDE. [Partially used for the SPT tutorial at the 2011 EMAN2 workshop]. 
 [[attachment:e2spt_users_guide.pdf| e2spt_users_guide.pdf|&do=get]]


==== 2D assessment of heterogeneity ====
 * [[attachment:population_dynamics_2009_11.pdf|Full tutorial on 2-D analysis for assessment of structural heterogeneity and population dynamics]]

== Advanced (EMAN2 through the ''e2.py'' Python prompt) ==
* [[EMAN2/Galleries/Testimages|Generate and display an EMAN2 test image]]

* [[EMAN2/Tutorials/RotateTranslate|Rotate, translate, scale or mirror an image]]

* [[EMAN2/Tutorials/AddAndMultiply|Add and multiply images, add and multiply by constants]]

* [[EMAN2/Tutorials/ri2ap|Convert a real/imaginary image into an amplitude/phase image and vice versa]]

* [[EMAN2/Tutorials/iter_pixels|Iterate through the pixels of an image]]

* [[EMAN2/Tutorials/make_a_projection|Make a projection of a 3D model, project through the asymmetric unit]]

{{attachment:2d_image_3dplot_2.png}}

* [[EMAN2LogLevel|Change log level in EMAN2]]