Differences between revisions 113 and 125 (spanning 12 versions)
Revision 113 as of 2017-01-18 18:18:01
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Editor: MuyuanChen
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Revision 125 as of 2017-09-06 07:27:50
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==== Short tutorials and info sheets ====
 * [[attachment:image_info.pdf|Information about images||&do=get]]
 * [[attachment:image_proc.pdf|Filtering and basic image processing||&do=get]]
 * [[attachment:ctf_sim.pdf|CTF Simulator||&do=get]]
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 * 2017 February Tutorial for EMAN2.2
  * [[attachment:EMAN2-2Tutorial.pdf||&do=get]]
   * [[http://blake.bcm.edu/dl/workshop_2016_bgal.zip|Tutorial Data Download]]
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 * [[EMAN2/Programs/convnet_pickparticle|tutorial for the Neural network particle picker]] (requires CUDA for good performance)
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 * [[EMAN2/Programs/convnet_pickparticle|An experimental new particle picker]] (requires installation of additional libraries)
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==== Single particle tomography (SPT) - 3D particles ==== ==== Single particle tomography (SPT) - subtomogram averaging - 3D Particles ====
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==== Automated Cellular Tomogram Annotation ==== ==== Automated Cellular Tomogram Annotation using Neural Networks ====

EMAN2 TUTORIALS

Beginners (introductory tutorials)

Please note that we are continuously developing and updating the tutorials. Items that are greyed out are planned but the tutorials have not yet been completed. Most tutorials include the necessary data. If you have a request for a particular tutorial please feel free to email sludtke@bcm.edu.

Video tutorials and discussions

Written Tutorials

Short tutorials and info sheets

  • [[attachment:image_info.pdf|Information about images||&do=get]]

  • [[attachment:image_proc.pdf|Filtering and basic image processing||&do=get]]

  • [[attachment:ctf_sim.pdf|CTF Simulator||&do=get]]

Single particle analysis (SPA) - 2D particles

Single particle tomography (SPT) - subtomogram averaging - 3D Particles

BOTH the tutorial in .pdf format and the data needed for the tutorial in a .zip file are provided in the page linked below:

Automated Cellular Tomogram Annotation using Neural Networks

Using the Built-In Modules from Other Software

Out of date tutorials (provided for data access, etc.)

Advanced (EMAN2 through the ''e2.py'' Python prompt)

* Generate and display an EMAN2 test image

* Rotate, translate, scale or mirror an image

* Add and multiply images, add and multiply by constants

* Convert a real/imaginary image into an amplitude/phase image and vice versa

* Iterate through the pixels of an image

* Make a projection of a 3D model, project through the asymmetric unit

2d_image_3dplot_2.png

* Change log level in EMAN2

EMAN2/Tutorials (last edited 2024-04-05 01:51:27 by MuyuanChen)