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EMAN2/Programs . . . 98 matches
...== EMAN2 Programs == '''This page is very incomplete, but running any EMAN2 program with the '--help' option will provide documentation for that program.''' == Generic Docs == ...

5.5k - rev: 66 (current) last modified: 2022-04-07 20:57:00

EMAN2/Programs/e2refine . . . 40 matches
...== e2refine == This program is the heart of single particle reconstruction in EMAN2. It embodies the concept of an iterative 3-D single particle reconstruction in a single step, ...

14.0k - rev: 10 (current) last modified: 2012-09-21 11:59:03

EMAN2/Programs/e2refinemulti . . . 30 matches
...== e2refinemulti == This is a variant of the standard [[EMAN2/Programs/e2refine|e2refine]] program. This version performs so-called multi-model refinement. Rather than producing ...

12.0k - rev: 2 (current) last modified: 2011-12-01 05:24:06

EMAN2/Programs/emselector . . . 17 matches
...| [[e2display|Display Basics]] | [[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EM...

1.9k - rev: 7 (current) last modified: 2010-09-14 14:34:39

EMAN2/Programs/emimagemx . . . 16 matches
...| [[e2display|Display Basics]] | [[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EM...

1.0k - rev: 13 (current) last modified: 2009-07-02 04:33:16

EMAN2/Programs/emimage3d . . . 15 matches
...| [[e2display|Display Basics]] | [[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EM...

1.5k - rev: 16 (current) last modified: 2009-07-02 04:32:39

EMAN2/Programs/emimage2d . . . 15 matches
...| [[e2display|Display Basics]] | [[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EM...

1.0k - rev: 14 (current) last modified: 2009-07-02 04:32:55

EMAN2/Programs/e2eulerxplor . . . 15 matches
...| [[e2display|Display Basics]] | [[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EM...

3.7k - rev: 37 (current) last modified: 2009-07-24 02:42:48

EMAN2/Programs/e2refinetorelion3d/e2refinetorelion3dtutorial . . . 14 matches
...Notes: *The main documentation for ''e2refinetorelion3d.py'' can be found [[EMAN2/Programs/e2refinetorelion3d|here]] *This tutorial is designed with the assumption that the use...

6.1k - rev: 44 (current) last modified: 2014-05-28 18:44:44

EMAN2/Programs/e2display . . . 13 matches
...|[[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EMAN2/Programs/emimage3d|3D Image ...

0.7k - rev: 6 (current) last modified: 2016-05-13 13:47:05

EMAN2/Programs/e2refinetofrealign . . . 10 matches
...e2refinetofrealign = === Information === Note - this program is normally run via the EMAN2 [[EMAN2/Programs/e2projectmanager|Project Manager]]. This program will take various f...

2.9k - rev: 16 (current) last modified: 2013-07-09 20:44:50

EMAN2/Programs/e2refinetorelion3d . . . 9 matches
...= e2refinetorelion3d = === Information === This program is normally run via the EMAN2 [[EMAN2/Programs/e2projectmanager|Project Manager]]. ''e2refinetorelion3d.py'' is run afte...

3.2k - rev: 19 (current) last modified: 2013-01-23 21:17:34

EMAN2/Programs/e2classaverage3d . . . 9 matches
...= e2classaverage3d = This program is the 3-D analog of [[EMAN2/Programs/e2classaverage|e2classaverage]]. It will iteratively align and average stacks of 3D particles. For a more...

4.4k - rev: 8 (current) last modified: 2011-03-22 21:27:04

EMAN2/Programs/e2refinetorelion2d . . . 6 matches
...= e2refinetorelion2d = === Information === This program is normally run via the EMAN2 [[EMAN2/Programs/e2projectmanager|Project Manager]]. ''e2refinetorelion2d.py'' is typicall...

2.2k - rev: 11 (current) last modified: 2013-01-23 21:17:53

EMAN2/Programs/e2refinetofrealign/e2refinetofrealigntutorial . . . 6 matches
...Notes: *The main documentation for ''e2refinetofrealign.py'' can be found [[EMAN2/Programs/e2refinetofrealign|here]] *This tutorial is designed with an assumption in mind: *T...

0.4k - rev: 1 (current) last modified: 2013-07-09 20:38:48

EMAN2/Programs/e2boxer . . . 6 matches
...ted]] | [[#tipsandtricks|Tips And Tricks]] | [[#generalinfo|General Information]] | [[EMAN2/boxerFAQ|e2boxer FAQ]] |[[EMAN2/boxerdevelopment|Development page]] | = e2boxer = ||...

3.9k - rev: 8 (current) last modified: 2010-12-02 14:47:30

EMAN2/Programs/e2simmx2stage . . . 5 matches
...| [[#args|Command line arguments]] | [[#checkfunc|Check functionality]] | [[EMAN2/e2simmx2stagefaq|e2simmx2stage FAQ]] | == e2simmx2stage == ||<35%><<TableOfContents>> || This...

1.0k - rev: 3 (current) last modified: 2010-01-06 21:13:50

EMAN2/Programs/e2initialmodel . . . 5 matches
...odel is then used to seed a single particle refinement, very similar to that used in [[EMAN2/Programs/e2refine|e2refine.py]]. However, in this case, the input images are just a fe...

5.0k - rev: 3 (current) last modified: 2011-09-09 17:07:05

EMAN2/Tutorials . . . 61 matches
...= EMAN2 Introductory Tutorials = ''Please note that we are continuously developing and updating the tutorials. Most tutorials include the necessary data. If you have a request for...

7.6k - rev: 179 (current) last modified: 2024-01-22 14:56:34

EMAN2/Important . . . 32 matches
...= Important Information = == For Everyone == * '''Working with Images''' - EMAN2 has '''many''' [[EMAN2/Modular/Overview|general image processing methods]], and the list is cont...

2.9k - rev: 9 (current) last modified: 2022-06-05 19:15:40

EMAN2/Eman1Transition/CommandLine . . . 25 matches
...= Transitioning from EMAN1 to EMAN2 with command line tools = While the workflow is the correct choice for many users, we realize that some prefer to manipulate their data more d...

13.1k - rev: 9 (current) last modified: 2015-03-06 03:49:27

EMAN2/e2tomo . . . 23 matches
... = EMAN2 Tomography Workflow Tutorial = * This tutorial is best suited for EMAN2 built after 09/27/2018. Not everything described in the tutorial was functioning yet in the 2.2...

28.9k - rev: 89 (current) last modified: 2022-08-29 14:20:27

EMAN2/ChangeLog . . . 23 matches
...uggest subscribing to or searching the [[https://groups.google.com/forum/?hl=en#!forum/eman2|Google Group]] when you have questions. We have resumed updating the ChangeLog here as...

18.4k - rev: 59 (current) last modified: 2023-03-11 01:10:54

EMAN2/ProgramFiles . . . 21 matches
...= EMAN2 Output Files = This page documents all of the various files produced by various tasks and workflows in EMAN2. While the format of the actual files will be one of the stan...

11.2k - rev: 24 (current) last modified: 2023-09-29 12:45:12

EMAN2PMWorkflow . . . 15 matches
...am into the projectmanager. === Modifications to the e2program itself === Canonical e2programs must maintain the following standards 1. Options are handled via EMArgumentParser, w...

6.2k - rev: 23 (current) last modified: 2012-04-19 20:22:10

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