Results 1 - 25 of 31 results out of about 4264 pages. (3.43 seconds)
- EMAN2/Programs . . . 98 matches
- ...== EMAN2 Programs ==
'''This page is very incomplete, but running any EMAN2 program with the '--help' option will provide documentation for that program.'''
== Generic Docs ==
...
- EMAN2/Programs/e2refine . . . 40 matches
- ...== e2refine ==
This program is the heart of single particle reconstruction in EMAN2. It embodies the concept of an iterative 3-D single particle reconstruction in a single step, ...
- EMAN2/Programs/e2refinemulti . . . 30 matches
- ...== e2refinemulti ==
This is a variant of the standard [[EMAN2/Programs/e2refine|e2refine]] program. This version performs so-called multi-model refinement. Rather than producing
...
- EMAN2/Programs/emselector . . . 17 matches
- ...| [[e2display|Display Basics]] | [[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EM...
- EMAN2/Programs/emimagemx . . . 16 matches
- ...| [[e2display|Display Basics]] | [[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EM...
- EMAN2/Programs/emimage3d . . . 15 matches
- ...| [[e2display|Display Basics]] | [[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EM...
- EMAN2/Programs/emimage2d . . . 15 matches
- ...| [[e2display|Display Basics]] | [[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EM...
- EMAN2/Programs/e2eulerxplor . . . 15 matches
- ...| [[e2display|Display Basics]] | [[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EM...
- EMAN2/Programs/e2refinetorelion3d/e2refinetorelion3dtutorial . . . 14 matches
- ...Notes:
*The main documentation for ''e2refinetorelion3d.py'' can be found [[EMAN2/Programs/e2refinetorelion3d|here]]
*This tutorial is designed with the assumption that the use...
- EMAN2/Programs/e2display . . . 13 matches
- ...|[[EMAN2/Programs/emselector|EMAN2 File Browser]] | [[EMAN2/Programs/emimage2d|2D Display]] | [[EMAN2/Programs/emimagemx|2D Stack Display]] | [[EMAN2/Programs/emimage3d|3D Image ...
- EMAN2/Programs/e2refinetofrealign . . . 10 matches
- ...e2refinetofrealign =
=== Information ===
Note - this program is normally run via the EMAN2 [[EMAN2/Programs/e2projectmanager|Project Manager]].
This program will take various f...
- EMAN2/Programs/e2refinetorelion3d . . . 9 matches
- ...= e2refinetorelion3d =
=== Information ===
This program is normally run via the EMAN2 [[EMAN2/Programs/e2projectmanager|Project Manager]].
''e2refinetorelion3d.py'' is run afte...
- EMAN2/Programs/e2classaverage3d . . . 9 matches
- ...= e2classaverage3d =
This program is the 3-D analog of [[EMAN2/Programs/e2classaverage|e2classaverage]]. It will iteratively align and average stacks
of 3D particles.
For a more...
- EMAN2/Programs/e2refinetorelion2d . . . 6 matches
- ...= e2refinetorelion2d =
=== Information ===
This program is normally run via the EMAN2 [[EMAN2/Programs/e2projectmanager|Project Manager]].
''e2refinetorelion2d.py'' is typicall...
- EMAN2/Programs/e2refinetofrealign/e2refinetofrealigntutorial . . . 6 matches
- ...Notes:
*The main documentation for ''e2refinetofrealign.py'' can be found [[EMAN2/Programs/e2refinetofrealign|here]]
*This tutorial is designed with an assumption in mind:
*T...
- EMAN2/Programs/e2boxer . . . 6 matches
- ...ted]] | [[#tipsandtricks|Tips And Tricks]] | [[#generalinfo|General Information]] | [[EMAN2/boxerFAQ|e2boxer FAQ]] |[[EMAN2/boxerdevelopment|Development page]] |
= e2boxer =
||...
- EMAN2/Programs/e2simmx2stage . . . 5 matches
- ...| [[#args|Command line arguments]] | [[#checkfunc|Check functionality]] | [[EMAN2/e2simmx2stagefaq|e2simmx2stage FAQ]] |
== e2simmx2stage ==
||<35%><<TableOfContents>> ||
This...
- EMAN2/Programs/e2initialmodel . . . 5 matches
- ...odel is then used to seed a single particle refinement, very similar to that used in [[EMAN2/Programs/e2refine|e2refine.py]]. However, in this case, the input images
are just a fe...
- EMAN2/Tutorials . . . 61 matches
- ...= EMAN2 Introductory Tutorials =
''Please note that we are continuously developing and updating the tutorials. Most tutorials include the necessary data. If you have a request for...
- EMAN2/Important . . . 32 matches
- ...= Important Information =
== For Everyone ==
* '''Working with Images''' - EMAN2 has '''many''' [[EMAN2/Modular/Overview|general image processing methods]], and the list is cont...
- EMAN2/Eman1Transition/CommandLine . . . 25 matches
- ...= Transitioning from EMAN1 to EMAN2 with command line tools =
While the workflow is the correct choice for many users, we realize that some prefer to manipulate their data more d...
- EMAN2/e2tomo . . . 23 matches
- ...
= EMAN2 Tomography Workflow Tutorial =
* This tutorial is best suited for EMAN2 built after 09/27/2018. Not everything described in the tutorial was functioning yet in the 2.2...
- EMAN2/ChangeLog . . . 23 matches
- ...uggest subscribing to or searching the [[https://groups.google.com/forum/?hl=en#!forum/eman2|Google Group]] when you have questions. We have resumed updating the ChangeLog here as...
- EMAN2/ProgramFiles . . . 21 matches
- ...= EMAN2 Output Files =
This page documents all of the various files produced by various tasks and workflows in EMAN2. While the format of the actual files will
be one of the stan...
- EMAN2PMWorkflow . . . 15 matches
- ...am into the projectmanager.
=== Modifications to the e2program itself ===
Canonical e2programs must maintain the following standards
1. Options are handled via EMArgumentParser, w...