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This list contains the most useful (and stable) programs from EMAN2. Running any EMAN2 program with the '--help' option
will provide basic documentation for that program.
Note that unning any EMAN2 program with the '--help' option will provide basic documentation for that program.
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 * [[EMAN2/Programs/e2scannereval|e2scannereval.py]] === Important Utilities ===
 * [[EMAN2/Programs/e2proc2d|e2proc2d.py]] - Generic 2-D image processing
 * [[EMAN2/Programs/e2proc3d|e2proc3d.py]] - Generic 3-D image processing
 * [[EMAN2/Programs/e2proc2d|e2bdb.py]] - Examine and manipulate EMAN2 database files
 * [[EMAN2/Programs/e2proc2d|e2iminfo.py]] - Examine image files
 * [[EMAN2/Programs/e2proc2d|e2display.py]] - Main program for 2-D and 3-D visualization and interactive manipulation

=== High Level Tasks ===
 * [[EMAN2/Programs/e2workflow|e2workflow.py]] - The GUI workflow interface. Suggested for all reconstruction projects.
 * [[EMAN2/Programs/e2workflow|e2refine2d.py]]
 * [[EMAN2/Programs/e2workflow|e2initialmodel.py]]
 * [[EMAN2/Programs/e2workflow|e2refine.py]]
 * [[EMAN2/Programs/e2workflow|e2eotest.py]]
 * [[EMAN2/Programs/e2workflow|e2evalrefine.py]]
 * [[EMAN2/Programs/e2workflow|e2classifyligand.py]]

=== Programs with a GUI ===
 * [[EMAN2/Programs/e2workflow|e2workflow.py]] - The GUI workflow interface. Suggested for all reconstruction projects.
 * [[EMAN2/Programs/e2proc2d|e2display.py]] - Main program for 2-D and 3-D visualization and interactive manipulation
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 * [[EMAN2/Programs/e2boxer2|e2boxer2.py]]  * [[EMAN2/Programs/e2boxer|e2ctf.py]]
 * [[EMAN2/Programs/e2helixboxer|e2eulerxplor.py]]
 * [[EMAN2/Programs/e2helixboxer|e2simmxxplor.py]]


=== Low Level Tasks ===
 * [[EMAN2/Programs/e2scannereval|e2scannereval.py]]
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 * [[EMAN2/Programs/e2display|e2display.py]]
 * [[EMAN2/Programs/e2eulerxplor|e2eulerxplor.py]]
 * [[EMAN2/Programs/e2fileinfo|e2fileinfo.py]]
 * [[EMAN2/Programs/e2flick|e2flick.py]]
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 * [[EMAN2/Programs/e2refine|e2refine.py]]
 * [[EMAN2/Programs/e2refine2d|e2refine2d.py]]
 * [[EMAN2/Programs/e2simmx2stage|e2simmx.py]]
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 * [[EMAN2/Programs/e2workflow|e2workflow.py]]


 * [[EMAN2/Programs/e2proc2d|e2proc2d.py]]
 * [[EMAN2/Programs/e2proc3d|e2proc3d.py]]

EMAN2 Programs

Note that unning any EMAN2 program with the '--help' option will provide basic documentation for that program.

Important Utilities

High Level Tasks

Programs with a GUI

Low Level Tasks

Generic Docs

slices_plus_cylinders.png

EMAN2/Programs (last edited 2018-04-25 00:59:47 by TunayDurmaz)