Diff for "EMAN2/Programs"

Differences between revisions 26 and 40 (spanning 14 versions)

EMAN2 Programs

Note that unning any EMAN2 program with the '--help' option will provide basic documentation for that program.

Important Utilities

e2proc2d.py - Generic 2-D image processing
e2proc3d.py - Generic 3-D image processing
e2bdb.py - Examine and manipulate EMAN2 database files
e2iminfo.py - Examine image files
e2display.py - Main program for 2-D and 3-D visualization and interactive manipulation

High Level Tasks

e2workflow.py - The GUI workflow interface. Suggested for all reconstruction projects.
e2refine2d.py
e2initialmodel.py
e2refine.py
e2eotest.py
e2evalrefine.py
e2classifyligand.py

Programs with a GUI

e2workflow.py - The GUI workflow interface. Suggested for all reconstruction projects.
e2display.py - Main program for 2-D and 3-D visualization and interactive manipulation
e2boxer.py
e2helixboxer.py
e2ctf.py
e2eulerxplor.py
e2simmxxplor.py

Low Level Tasks

e2scannereval.py
e2classaverage.py
e2ctf.py
e2make3d.py
e2project3d.py
e2simmx.py
e2simmx2stage.py

Generic Docs

Standard parameters used in multiple programs

-  ⇤ ← Revision 26 as of 2009-03-02 20:57:27 → 
  Size: 539
  Editor: DavidWoolford
  Comment:
+   ← Revision 40 as of 2010-09-14 12:31:01 → ⇥
  Size: 2050
  Editor: SteveLudtke
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 3:
- * [[e2scanner|e2scannereval.py]]
 * [[e2boxer|e2boxer.py]]
 * [[e2classaverage|e2classaverage.py]]
 * [[EMAN2/programs/e2ctf|e2ctf.py]]
 * [[e2desktop|e2desktop.py]]
 * [[e2display|e2display.py]]
 * [[e2fileinfo|e2fileinfo.py]]
 * [[e2flick.py]]
 * [[e2make3d|e2make3d.py]]
 * [[e2project3d|e2project3d.py]]
 * [[e2refine|e2refine.py]]
 * [[e2workflow|e2workflow.py]]
+Note that unning any EMAN2 program with the '--help' option will provide basic documentation for that program.

=== Important Utilities ===
 * [[EMAN2/Programs/e2proc2d|e2proc2d.py]] - Generic 2-D image processing
 * [[EMAN2/Programs/e2proc3d|e2proc3d.py]] - Generic 3-D image processing
 * [[EMAN2/Programs/e2proc2d|e2bdb.py]] - Examine and manipulate EMAN2 database files
 * [[EMAN2/Programs/e2proc2d|e2iminfo.py]] - Examine image files
 * [[EMAN2/Programs/e2proc2d|e2display.py]] - Main program for 2-D and 3-D visualization and interactive manipulation

=== High Level Tasks ===
 * [[EMAN2/Programs/e2workflow|e2workflow.py]] - The GUI workflow interface. Suggested for all reconstruction projects.
 * [[EMAN2/Programs/e2workflow|e2refine2d.py]]
 * [[EMAN2/Programs/e2workflow|e2initialmodel.py]]
 * [[EMAN2/Programs/e2workflow|e2refine.py]]
 * [[EMAN2/Programs/e2workflow|e2eotest.py]]
 * [[EMAN2/Programs/e2workflow|e2evalrefine.py]]
 * [[EMAN2/Programs/e2workflow|e2classifyligand.py]]

=== Programs with a GUI ===
 * [[EMAN2/Programs/e2workflow|e2workflow.py]] - The GUI workflow interface. Suggested for all reconstruction projects.
 * [[EMAN2/Programs/e2proc2d|e2display.py]] - Main program for 2-D and 3-D visualization and interactive manipulation
 * [[EMAN2/Programs/e2boxer|e2boxer.py]]
 * [[EMAN2/Programs/e2helixboxer|e2helixboxer.py]]
 * [[EMAN2/Programs/e2boxer|e2ctf.py]]
 * [[EMAN2/Programs/e2helixboxer|e2eulerxplor.py]]
 * [[EMAN2/Programs/e2helixboxer|e2simmxxplor.py]]
-Line 17:
+Line 31:
- * [[e2proc2d.py]]
 * [[e2proc2d.py]]
+=== Low Level Tasks ===
 * [[EMAN2/Programs/e2scannereval|e2scannereval.py]]
 * [[EMAN2/Programs/e2classaverage|e2classaverage.py]]
 * [[EMAN2/Programs/e2ctf|e2ctf.py]]
 * [[EMAN2/Programs/e2make3d|e2make3d.py]]
 * [[EMAN2/Programs/e2project3d|e2project3d.py]]
 * [[EMAN2/Programs/e2simmx2stage|e2simmx.py]]
 * [[EMAN2/Programs/e2simmx2stage|e2simmx2stage.py]]
-Line 22:
+Line 42:
+{{attachment:slices_plus_cylinders.png}}