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e2simmx2stage

This program computes a similarity matrix similar to e2simmx, but in this case, the matrix is sparse to make the computation faster. The populated regions will correspond to the best similarity values.

Fig. 1. Overview of data inputs and outputs in the EMAN2 refinement pipeline. Pink objects are data supplied by the user, blue objects are programs, and green objects are data output by EMAN2 programs.

Command Line Arguments

For command line options, see e2simmx.py