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The most commonly used comparators and options are:

 * ccc - simple cross correlation coefficient (dot product). Causes orientation bias for some particles, but generally good for initial coarse alignments.
 * frc:snrweight=1:zeromask=1 - Integrated Fourier ring correlation coefficient, in this case with SSNR weighting and noise masking. This is the standard for the highest resolution reconstructions. If used without snrweight=1, it is important to set a good maxres= value instead.
 * phase:snrweight=1:zeromask=1 - Similar to frc, but uses mean phase error instead.

Comparators (cmp)

To get a current list of Comaparators, run e2help.py cmp or for more detailed information e2help.py cmp -v 2.

The most commonly used comparators and options are:

  • ccc - simple cross correlation coefficient (dot product). Causes orientation bias for some particles, but generally good for initial coarse alignments.
  • frc:snrweight=1:zeromask=1 - Integrated Fourier ring correlation coefficient, in this case with SSNR weighting and noise masking. This is the standard for the highest resolution reconstructions. If used without snrweight=1, it is important to set a good maxres= value instead.
  • phase:snrweight=1:zeromask=1 - Similar to frc, but uses mean phase error instead.

EMAN2/Modular/Cmps (last edited 2011-07-11 19:59:02 by SteveLudtke)