|
Size: 471
Comment:
|
Size: 1274
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| EMAN2 use Boost.python to wrap c++ function to Python. Pyste is a Boost.Python code generator. In EMAN2 there is a script create_boost_python in /eman2/libpyEM directory to create c++ wrapping file linpy***.cpp. Then the c++ compiler will create libraries which contain all the Python function call of EMAN2. Current release of Pyste has a dificit for the default argument handling. So please replace two of your Pyste files in Python site-packages with attached files. | === Documentation for Python or C++ Programmers === * [:EMAN2DevFAQ:EMAN2 developer's FAQ] * [:Eman2ProgQuickstart:EMAN2 programming quickstart] * [:Eman2DataStorage:EMAN2 data storage, format conversion and local database] * [:Eman2Metadata:Parameters/Metadata appearing in EMData attributes (and stored on disk with the image), accessed with get_attr and set_attr] * [:Eman2AppMetadata:Parameters/Metadata for applications, not associated with a specific image, stored in bdb:project] * [:Eman2UsingFTGL:Using FTGL in python/EMAN2] * [:Eman2TransformInPython:Using the Transform object in python/EMAN2] * [:Eman2FactoriesInPython: Abstract factories in python/EMAN2] * [:EMAN1To2Translation:Limited Table of translations from EMAN1 functions -> EMAN2] * [http://blake.bcm.edu/eman2/doxygen_html/ Autogenerated Python/C++ Documentation (Doxygen)] * There are a LOT of classes in the automatic docs. Basic images are represented by the EMData class * The EMData methods process, cmp, align, and project are modular methods with many available functions. Use dump_processors(), dump_cmps(), etc. * There are a few classes like analyzers and reconstructors which are not methods of EMData * Many utility functions are static members of EMUtil |
Documentation for Python or C++ Programmers
- [:EMAN2DevFAQ:EMAN2 developer's FAQ]
[:Eman2ProgQuickstart:EMAN2 programming quickstart]
[:Eman2DataStorage:EMAN2 data storage, format conversion and local database]
[:Eman2Metadata:Parameters/Metadata appearing in EMData attributes (and stored on disk with the image), accessed with get_attr and set_attr]
[:Eman2AppMetadata:Parameters/Metadata for applications, not associated with a specific image, stored in bdb:project]
- [:Eman2UsingFTGL:Using FTGL in python/EMAN2]
[:Eman2TransformInPython:Using the Transform object in python/EMAN2]
[:Eman2FactoriesInPython: Abstract factories in python/EMAN2]
[:EMAN1To2Translation:Limited Table of translations from EMAN1 functions -> EMAN2]
[http://blake.bcm.edu/eman2/doxygen_html/ Autogenerated Python/C++ Documentation (Doxygen)]
- There are a LOT of classes in the automatic docs. Basic images are represented by the EMData class
- The EMData methods process, cmp, align, and project are modular methods with many available functions. Use dump_processors(), dump_cmps(), etc.
- There are a few classes like analyzers and reconstructors which are not methods of EMData
- Many utility functions are static members of EMUtil