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| '''Q: I am very much interested in trying EMAN2. However, after the installation on Linux system (eman2.nightly.linux64.tar.bz2), and modification of my .cshrc file by adding source /***/EMAN2/eman2.cshrc, it always showed "EMAN2DIR: Undefined variable.". Any suggestions to solve the problem? Thank you.''' | Please ask your EMAN2 specific questions here. It is monitored, and one of the EMAN2 developers should post a reply. You can subscribe to any page to get an email announcement when a change is made to specific pages. You can also check our [[http://blake.bcm.edu/bugzilla/|bug tracking system]] '''General:''' * [[EMAN2/FAQ/UseEman2|Can I use EMAN2 to do refinements yet ?]] * [[EMAN2/FAQ/CiteEman2|What paper should I cite if I use EMAN2 for a reconstruction]] '''Installation''' * [[EMAN2/FAQ/ClusterInstall|Why is EMAN2 distributed as an 'EMAN2' directory rather than Linux RPM's, etc. ?]] * [[EMAN2/FAQ/UseEman2_OSX|EMAN2 installed under OSX doesn't work properly. Any suggestions?]] * [[EMAN2/FAQ/UseEman2_Windows|EMAN2 installed under Windows doesn't work properly. Any suggestions?]] * [[EMAN2/FAQ/UseEman2_Ubuntu|EMAN2 installed under Ubuntu 8.04 Linux doesn't work properly. Any suggestions?]] * [[EMAN2/FAQ/Ubuntu_8.10_error_running_e2.py|Ubuntu 8.10 error running e2.py]] * [[EMAN2/FAQ/OpenSuSE_11.1|EMAN2 installed on OpenSuSE got "symbol lookup error"]] * More installation FAQs can be found on the [[EMAN2/Install|Installation]] page. '''BDB Issues ''' * [[EMAN2/FAQ/BdbErrors|I'm getting funny errors that seem to be related to BDB. What do I do ???]] * [[EMAN2/FAQ/BdbVstack|Can I make a vstack from another vstack, including only a subset of the images ? What will this do ?]] |
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| A: This is a bug in the eman2-installer script for C Shell. I have fixed it today. Next daily release will not have this problem. For this time you can manully execute "setenv EMAN2DIR /***/EMAN2". | '''Refinement Issues''' * [[EMAN2/FAQ/Symmetry|What symmetry should I use for my particle if I don't know what it is ?]] * [[EMAN2/FAQ/AutoMask|How do I pick the correct parameters for automasking during refinement or using the mask.auto3d processor]] * [[EMAN2/FAQ/ChangeBoxSize|I just decided that my box size is too large, and I want to make it smaller, how can I do this without making a mess ?]] * [[EMAN2/FAQ/InvertData|I just realized that I forgot to invert my data. I see black protein on a white background. What do I do ?]] '''Program Specific FAQ''' * [[EMAN2/boxerFAQ|e2boxer FAQ]] * [[EMAN2/e2make3dfaq|e2make3d FAQ]] '''Programming FAQ''' * [[EMAN2MakingVolumes|Is there a way to build a volume EMData object from a set of slices ?]] '''EMAN2 and other software''' * [[EMAN2/FAQ/SpiderEuler|Can I convert EMAN2 Euler angles from e2initialmodel.py to Spider (or other) convention ?]] |
Please ask your EMAN2 specific questions here. It is monitored, and one of the EMAN2 developers should post a reply. You can subscribe to any page to get an email announcement when a change is made to specific pages.
You can also check our bug tracking system
General:
Installation
Why is EMAN2 distributed as an 'EMAN2' directory rather than Linux RPM's, etc. ?
EMAN2 installed under OSX doesn't work properly. Any suggestions?
EMAN2 installed under Windows doesn't work properly. Any suggestions?
EMAN2 installed under Ubuntu 8.04 Linux doesn't work properly. Any suggestions?
More installation FAQs can be found on the Installation page.
BDB Issues
I'm getting funny errors that seem to be related to BDB. What do I do ???
Can I make a vstack from another vstack, including only a subset of the images ? What will this do ?
Refinement Issues
Program Specific FAQ
Programming FAQ
EMAN2 and other software