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| I am very much interested in trying EMAN2. However, after the installation on Linux system (eman2.nightly.linux64.tar.bz2), and modification of my .cshrc file by adding source /***/EMAN2/eman2.cshrc, it always showed "EMAN2DIR: Undefined variable.". Any suggestions to solve the problem? Thank you. | Our [[https://groups.google.com/forum/#!forum/eman2|Google Group]] is now the primary place for ongoing EMAN2 discussions. '''General:''' * [[EMAN2/FAQ/CiteEman2|What paper should I cite if I use EMAN2 for a reconstruction]] '''Installation''' * Installation FAQs can be found on the [[EMAN2/Install|Installation]] page. * [[EMAN2/FAQ/Computer|What sort of computer should I buy]] ? '''BDB Issues ''' (obsolete. BDB no longer used in EMAN2.1) * [[EMAN2/FAQ/NfsBdb|We use NFS-mounted directories, how can I safely use EMAN2 with it's BDB system]] * [[EMAN2/FAQ/BdbConvert|How can I convert these funny 'bdb' files into something I can use in Chimera or other software ?]] * [[EMAN2/FAQ/BdbErrors|I'm getting funny errors that seem to be related to BDB. What do I do ???]] * [[EMAN2/FAQ/BdbVstack|Can I make a vstack from another vstack, including only a subset of the images ? What will this do ?]] '''Refinement Issues''' * [[EMAN2/FAQ/Symmetry|What symmetry should I use for my particle if I don't know what it is ?]] * [[EMAN2/FAQ/AutoMask|How do I pick the correct parameters for automasking during refinement or using the mask.auto3d processor]] * [[EMAN2/FAQ/ChangeBoxSize|I just decided that my box size is too large, and I want to make it smaller, how can I do this without making a mess ?]] * [[EMAN2/FAQ/InvertData|I just realized that I forgot to invert my data. I see black protein on a white background. What do I do ?]] * [[EMAN2/FAQ/FSC|I computed my FSC curves and they look funny, what's going on, and how can I get them to look better]] '''Program Specific FAQ''' * [[EMAN2/boxerFAQ|e2boxer FAQ]] * [[EMAN2/e2make3dfaq|e2make3d FAQ]] '''Programming FAQ''' * [[EMAN2MakingVolumes|Is there a way to build a volume EMData object from a set of slices ?]] '''EMAN2 and other software''' * [[EMAN2/FAQ/SpiderEuler|Can I convert EMAN2 Euler angles from e2initialmodel.py to Spider (or other) convention ?]] |
Our Google Group is now the primary place for ongoing EMAN2 discussions.
General:
Installation
Installation FAQs can be found on the Installation page.
BDB Issues (obsolete. BDB no longer used in EMAN2.1)
We use NFS-mounted directories, how can I safely use EMAN2 with it's BDB system
How can I convert these funny 'bdb' files into something I can use in Chimera or other software ?
I'm getting funny errors that seem to be related to BDB. What do I do ???
Can I make a vstack from another vstack, including only a subset of the images ? What will this do ?
Refinement Issues
What symmetry should I use for my particle if I don't know what it is ?
I computed my FSC curves and they look funny, what's going on, and how can I get them to look better
Program Specific FAQ
Programming FAQ
EMAN2 and other software