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| Please ask your EMAN2 specific questions here. It is monitored, and one of the EMAN2 developers should post a reply. You can subscribe to any page to get an email announcement when a change is made to specific pages. | Our [[https://groups.google.com/forum/#!forum/eman2|Google Group]] is now the primary place for ongoing EMAN2 discussions. You can also check our [[http://blake.bcm.edu/bugzilla/|bug tracking system]] |
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| * [:EMAN2/FAQ/UseEman2:Can I use EMAN2 to do refinements yet ?] | '''General:''' |
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| * [:EMAN2/FAQ/UseEman2 OSX:EMAN2 installed under OSX doesn't work properly. Any suggestions?] | * [[EMAN2/FAQ/CiteEman2|What paper should I cite if I use EMAN2 for a reconstruction]] |
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| * [:EMAN2/FAQ/UseEman2 Windows:EMAN2 installed under Windows doesn't work properly. Any suggestions?] | '''Installation''' |
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| * [:EMAN2/FAQ/UseEman2 Ubuntu:EMAN2 installed under Ubuntu 8.04 Linux doesn't work properly. Any suggestions?] | * Installation FAQs can be found on the [[EMAN2/Install|Installation]] page. * [[EMAN2/FAQ/Computer|What sort of computer should I buy]] ? '''BDB Issues ''' * [[EMAN2/FAQ/NfsBdb|We use NFS-mounted directories, how can I safely use EMAN2 with it's BDB system]] * [[EMAN2/FAQ/BdbConvert|How can I convert these funny 'bdb' files into something I can use in Chimera or other software ?]] * [[EMAN2/FAQ/BdbErrors|I'm getting funny errors that seem to be related to BDB. What do I do ???]] * [[EMAN2/FAQ/BdbVstack|Can I make a vstack from another vstack, including only a subset of the images ? What will this do ?]] '''Refinement Issues''' * [[EMAN2/FAQ/Symmetry|What symmetry should I use for my particle if I don't know what it is ?]] * [[EMAN2/FAQ/AutoMask|How do I pick the correct parameters for automasking during refinement or using the mask.auto3d processor]] * [[EMAN2/FAQ/ChangeBoxSize|I just decided that my box size is too large, and I want to make it smaller, how can I do this without making a mess ?]] * [[EMAN2/FAQ/InvertData|I just realized that I forgot to invert my data. I see black protein on a white background. What do I do ?]] * [[EMAN2/FAQ/FSC|I computed my FSC curves and they look funny, what's going on, and how can I get them to look better]] '''Program Specific FAQ''' * [[EMAN2/boxerFAQ|e2boxer FAQ]] * [[EMAN2/e2make3dfaq|e2make3d FAQ]] '''Programming FAQ''' * [[EMAN2MakingVolumes|Is there a way to build a volume EMData object from a set of slices ?]] '''EMAN2 and other software''' * [[EMAN2/FAQ/SpiderEuler|Can I convert EMAN2 Euler angles from e2initialmodel.py to Spider (or other) convention ?]] |
Our Google Group is now the primary place for ongoing EMAN2 discussions. You can also check our bug tracking system
General:
Installation
Installation FAQs can be found on the Installation page.
BDB Issues
We use NFS-mounted directories, how can I safely use EMAN2 with it's BDB system
How can I convert these funny 'bdb' files into something I can use in Chimera or other software ?
I'm getting funny errors that seem to be related to BDB. What do I do ???
Can I make a vstack from another vstack, including only a subset of the images ? What will this do ?
Refinement Issues
What symmetry should I use for my particle if I don't know what it is ?
I computed my FSC curves and they look funny, what's going on, and how can I get them to look better
Program Specific FAQ
Programming FAQ
EMAN2 and other software