|
Size: 1653
Comment:
|
Size: 2123
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 2: | Line 2: |
| ''released 11/2006'' | ''released 01/2007'' |
| Line 4: | Line 4: |
| The EMAN1 Wiki isn't as complete as the EMAN2 Wiki, as EMAN1 is gradually being deprecated in favor of the latter, and the EMAN1 static documentation is fairly complete. Both EMAN1 and EMAN2 can be installed simultaneously, and EMAN2 does not yet allow complete reconstructions. |
'''''IMPORTANT NOTE: You MUST create an account for yourself if you wish to add content to the Wiki. To do this, click on the Login button above, then follow the UserPreferences link. ''''' |
| Line 9: | Line 6: |
| EMAN1/Programs/SpeedTest|TEST The EMAN1 Wiki is just getting started, and will likely never be as complete as the [:EMAN2:EMAN2 Wiki] (EMAN1 is gradually being deprecated in favor of EMAN2, and the EMAN1 static documentation is fairly complete). Please feel free to contribute your own comments and ideas. * [:EMAN1/Install:Installation Instructions/Tips] |
|
| Line 10: | Line 12: |
| * [wiki:/SPAOverview Overview of single particle reconstruction] * [wiki:/Programs Documentation of individual programs] * [wiki:/Library Python/C++ Library Docs (EMAN2 preferred) |
* [:EMAN1/SPAOverview:Overview of single particle reconstruction] * [:EMAN1/Programs:Documentation of individual programs] * [:EMAN1/Library:Python/C++ Library Docs (EMAN2 preferred)] |
| Line 14: | Line 16: |
| '''Ask your questions here:''' * [:EMAN1/FAQ:Frequently Asked Questions (add your general questions here)] * [:EMAN1/Projects:Questions on specific projects (add your project-specific questions here)] |
|
| Line 16: | Line 22: |
| EMAN is a suite of scientific image processing tools aimed primarily at the transmission electron microscopy community, though it is beginning to be used in other fields as well. For example it can do an admirable job aligning images for amateur astronomers. EMAN has a particular focus on performing a task known as single particle reconstruction. In this method, images of nanoscale molecules and molecular assemblies embedded in vitreous (glassy) ice are collected on a transmission electron microscope, then processed using EMAN to produce a complete 3-D recosntruction at resolutions now approaching atomic resolution. For low resolution structures (~2 nm), this may require ~8 hours of computer processing and a few thousand particles. For structures aimed at ~0.5 nm or better resolution, hundreds of thousands of particles and hundreds of thousands of CPU-hours (on large computational clusters) may be required. Indeed, EMAN is often used in supercomputing facilities as a test application for large-scale computing. |
EMAN is a suite of scientific image processing tools aimed primarily at the transmission electron microscopy community, though it is beginning to be used in other fields as well. For example it can do an admirable job aligning images for amateur astronomers. EMAN has a particular focus on performing a task known as single particle reconstruction. In this method, images of nanoscale molecules and molecular assemblies embedded in vitreous (glassy) ice are collected on a transmission electron microscope, then processed using EMAN to produce a complete 3-D recosntruction at resolutions now approaching atomic resolution. For low resolution structures (~2 nm), this may require ~8 hours of computer processing and a few thousand particles. For structures aimed at ~0.5 nm or better resolution, hundreds of thousands of particles and hundreds of thousands of CPU-hours (on large computational clusters) may be required. Indeed, EMAN is often used in supercomputing facilities as a test application for large-scale computing. |
EMAN 1.8
released 01/2007
IMPORTANT NOTE: You MUST create an account for yourself if you wish to add content to the Wiki. To do this, click on the Login button above, then follow the UserPreferences link.
EMAN1/Programs/SpeedTest|TEST
The EMAN1 Wiki is just getting started, and will likely never be as complete as the [:EMAN2:EMAN2 Wiki] (EMAN1 is gradually being deprecated in favor of EMAN2, and the EMAN1 static documentation is fairly complete). Please feel free to contribute your own comments and ideas.
[:EMAN1/Install:Installation Instructions/Tips]
[http://blake.bcm.tmc.edu/eman/eman1/ Static (non Wiki) Documentation]
[:EMAN1/SPAOverview:Overview of single particle reconstruction]
[:EMAN1/Programs:Documentation of individual programs]
[:EMAN1/Library:Python/C++ Library Docs (EMAN2 preferred)]
Ask your questions here:
[:EMAN1/FAQ:Frequently Asked Questions (add your general questions here)]
[:EMAN1/Projects:Questions on specific projects (add your project-specific questions here)]
About EMAN
EMAN is a suite of scientific image processing tools aimed primarily at the transmission electron microscopy community, though it is beginning to be used in other fields as well. For example it can do an admirable job aligning images for amateur astronomers. EMAN has a particular focus on performing a task known as single particle reconstruction. In this method, images of nanoscale molecules and molecular assemblies embedded in vitreous (glassy) ice are collected on a transmission electron microscope, then processed using EMAN to produce a complete 3-D recosntruction at resolutions now approaching atomic resolution. For low resolution structures (~2 nm), this may require ~8 hours of computer processing and a few thousand particles. For structures aimed at ~0.5 nm or better resolution, hundreds of thousands of particles and hundreds of thousands of CPU-hours (on large computational clusters) may be required. Indeed, EMAN is often used in supercomputing facilities as a test application for large-scale computing.