= procpdb.py =

 ''This program is for performing simple operations on PDB files''

== Usage ==
 procpdb.py <infile> [<outfile>] [rot=<alt,az,phi>] [trans=<dx,dy,dz>] [posttrans=<dx,dy,dz>] [centeratoms] [centerelec] [centermass] [animorph=<n>,<apix>,<vecfile>] [apix=<A/pix>] [split] [include=[helix,sheet,other] [chains=<chainltr>]

=== Parameters ===
 || <infile>||Input file||
 ||[<outfile>]||Output file||
 ||[rot=<alt,az,phi>]||Rotation in EMAN convention||
 ||[trans=<dx,dy,dz>]||Translate (before rotation)||
 ||[posttrans=<dx,dy,dz>]||Post-translation||
 ||[centeratoms]||Center based on the mean atom position||
 ||[centerelec]||Center based on the center of electron charge||
 ||[centermass]||Center based on the center of mass||
 ||[animorph=<n>,<apix>,<vecfile>]||This will use a morph vector file (segment3d) to morph atom positions||
 ||[apix=<A/pix>]||multiply trans by apix||
 ||[split]||Split file at TER records. Results imperfect.||
 ||[include=[helix,sheet,other]||[include=[helix,sheet,other]]||
 ||[chains=<chainltr>]||eg - "ABO", for extracting a portion of a complex||


== Description ==
Simple program for manipulating PDB files in the EMAN convention

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EMAN Manual page, generated Mon Jan  8 17:35:59 2007