Differences between revisions 3 and 4

procpdb.py

Usage

procpdb.py <infile> [<outfile>] [rot=<alt,az,phi>] [trans=<dx,dy,dz>] [posttrans=<dx,dy,dz>] [centeratoms] [centerelec] [centermass] [animorph=<n>,<apix>,<vecfile>] [apix=<A/pix>] [split] [include=[helix,sheet,other] [chains=<chainltr>]

<infile>	Input file
[<outfile>]	Output file
[rot=<alt,az,phi>]	Rotation in EMAN convention
[trans=<dx,dy,dz>]	Translate (before rotation)
[posttrans=<dx,dy,dz>]	Post-translation
[centeratoms]	Center based on the mean atom position
[centerelec]	Center based on the center of electron charge
[centermass]	Center based on the center of mass
[animorph=<n>,<apix>,<vecfile>]	This will use a morph vector file (segment3d) to morph atom positions
[apix=<A/pix>]	multiply trans by apix
[split]	Split file at TER records. Results imperfect.
[include=[helix,sheet,other]	[include=[helix,sheet,other]]
[chains=<chainltr>]	eg - "ABO", for extracting a portion of a complex

Simple program for manipulating PDB files in the EMAN convention

EMAN Manual page, generated Mon Jan 8 17:35:59 2007

-  ⇤ ← Revision 3 as of 2007-02-09 20:28:49 → 
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  Editor: bcm148-114
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+   ← Revision 4 as of 2007-02-09 20:29:22 → ⇥
  Size: 1266
  Editor: bcm148-114
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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-procpdb.py <infile> [<outfile>] [rot=<alt,az,phi>] [trans=<dx,dy,dz>] [posttrans=<dx,dy,dz>] [centeratoms] [centerelec] [centermass] [animorph=<n>,<apix>,<vecfile>] [apix=<A/pix>] [split] [include=[helix,sheet,other] [chains=<chainltr>]
+ procpdb.py <infile> [<outfile>] [rot=<alt,az,phi>] [trans=<dx,dy,dz>] [posttrans=<dx,dy,dz>] [centeratoms] [centerelec] [centermass] [animorph=<n>,<apix>,<vecfile>] [apix=<A/pix>] [split] [include=[helix,sheet,other] [chains=<chainltr>]